matrixStats: Functions that Apply to Rows and Columns of Matrices (and to Vectors)

High-performing functions operating on rows and columns of matrices, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized. There are also optimized vector-based methods, e.g. binMeans(), madDiff() and weightedMedian().

Version: 1.5.0
Depends: R (≥ 3.4.0)
Suggests: utils, base64enc, ggplot2, knitr, markdown, microbenchmark, R.devices, R.rsp
Published: 2025-01-07
DOI: 10.32614/CRAN.package.matrixStats
Author: Henrik Bengtsson [aut, cre, cph], Constantin Ahlmann-Eltze [ctb], Hector Corrada Bravo [ctb], Robert Gentleman [ctb], Jan Gleixner [ctb], Peter Hickey [ctb], Ola Hossjer [ctb], Harris Jaffee [ctb], Dongcan Jiang [ctb], Peter Langfelder [ctb], Brian Montgomery [ctb], Angelina Panagopoulou [ctb], Hugh Parsonage [ctb], Jakob Peder Pettersen [ctb]
Maintainer: Henrik Bengtsson <henrikb at braju.com>
BugReports: https://github.com/HenrikBengtsson/matrixStats/issues
License: Artistic-2.0
URL: https://github.com/HenrikBengtsson/matrixStats
NeedsCompilation: yes
Materials: NEWS
CRAN checks: matrixStats results

Documentation:

Reference manual: matrixStats.html , matrixStats.pdf
Vignettes: matrixStats: Summary of functions (source)

Downloads:

Package source: matrixStats_1.5.0.tar.gz
Windows binaries: r-devel: matrixStats_1.5.0.zip, r-release: matrixStats_1.5.0.zip, r-oldrel: matrixStats_1.5.0.zip
macOS binaries: r-release (arm64): matrixStats_1.5.0.tgz, r-oldrel (arm64): matrixStats_1.5.0.tgz, r-release (x86_64): matrixStats_1.5.0.tgz, r-oldrel (x86_64): matrixStats_1.5.0.tgz
Old sources: matrixStats archive

Reverse dependencies:

Reverse depends: aSPU, bahc, BayesTwin, BRISC, CopulaGAMM, FastPCS, FastRCS, InfiniumPurify, localgauss, ODT, OptHoldoutSize, POMaSPU, Qest, Rediscover, sindyr, SPARRAfairness, ttScreening
Reverse imports: abcrf, ablasso, ACNE, ActivityIndex, adproclus, AGHmatrix, ALDEx3, apollo, aRD, aroma.affymetrix, aroma.cn, aroma.core, bartMachine, BayesBrainMap, bayesDiagnostics, BayesfMRI, BayesianPlatformDesignTimeTrend, bcf, bdsvd, bigstep, binsreg, blackbox, blox, bmm, bnclassify, BREADR, brms, bspcov, BSW, calmate, Canek, CARBayesST, causalOT, ccar3, CDF, cellGeometry, cellWise, CimpleG, CIPerm, ClustAssess, cmahalanobis, cna, cnaOpt, CNVScope, cobin, coconots, cohetsurr, coin, cointmonitoR, cointReg, colocboost, colorrepel, conformalbayes, conquer, cophescan, cosinor2, countts, cpam, CpGFilter, cSEM, ctgimme, CureDepCens, cvCovEst, dagHMM, DAMOCLES, DCLEAR, ddtlcm, decompr, DepCens, DHS.rates, disbayes, DMtest, dplR, DSWE, dwp, eaf, ecospat, eGST, ernest, eseis, ExceedanceTools, exdqlm, expss, FADA, fairsubset, familial, FateID, felp, fipp, fkbma, flexmsm, flocker, fMRItools, footBayes, FracFixR, GAD, GenEst, geocmeans, GeoThinneR, ggdmc, GJRM, GLMMadaptive, GPGame, graphicalMCP, GTEs, GulFM, GUniFrac, HACSim, haldensify, HaploDiploidEquilibrium, harf, hbamr, HDSpatialScan, Hmsc, HonestDiD, hrf, hubEnsembles, ICBioMark, icio, icpack, IMIFA, ImpactEffectsize, incidental, inDAGO, Infusion, iperform, irace, iraceplot, JMbayes2, jmv, JointFPM, jointseg, kgschart, l1rotation, latrend, LDM, ldsep, LFDREmpiricalBayes, lfproQC, LikertMakeR, locaR, LOCOM2, LongitudinalEvalue, loo, LS2Wstat, lspartition, ltmle, Luminescence, maicplus, matrixTests, mbg, mbsts, mclink, MEDseq, MetabolicSurv, mgcViz, miclust, MicrobiomeStat, midasINLA, miesmuschel, migest, miRecSurv, MoEClust, moocore, mooplot, MosaiClusteR, mr.mashr, mrfDepth, mult.latent.reg, multinomialLogitMix, MuTATE, mvnma, mvpd, mzipmed, nbconv, NeEDS4BigData, nestedcv, neuralGAM, neurobase, nparMD, obfuscatoR, occupancy, omicsTools, omicwas, OncoBayes2, OptimalDesign, Ostats, pARI, pecora, penppml, pgKDEsphere, PINSPlus, PlackettLuce, posterior, priorsense, PSCBS, PSIM, Pv3Rs, RAC, RaceID, rADA, RandomForestsGLS, randomGLM, randomizationInference, RBesT, RCarb, RChASM, Reacnorm, recommenderlab, reservr, RGCCA, rhierbaps, riemtan, RMCDA, Rmfrac, RNAseqQC, robustlm, Rogue, rpm, RSquaredMI, RSTr, rsvddpd, RTCC, rtrend, rvec, samr, sanba, SANvi, scDHA, scISR, SCoRES, scPloidy, scpoisson, sctransform, sensobol, Seurat, SGP, simPop, SingleCellStat, sizeMat, slasso, spaMM, SpatMix, spdesign, SQI, SQIpro, stabiliser, stability, stagedtrees, stapler, staRdom, statar, stm, stoppingrule, sts, summarytools, SuperCell, surveyPrev, susieR, TaxaNorm, TCA, templateICAr, tepr, TestNet, ThurMod, TopDom, UBayFS, Unico, UPG, VICatMix, walking, WaverideR, weakARMA, WeMix, WGCNA, winputall, WQM, yaap, ZIHINAR1
Reverse suggests: AgePopDenom, ChemoSpec2D, cifti, COINr, delarr, detrendr, dynamicSDM, EstimationTools, fastcpd, gap, genpca, glossa, GPUmatrix, grandR, limorhyde, LSAmitR, MSclassifR, MultiBD, multivarious, mvgam, nandb, numbat, redist, regsem, RHRT, rtemis, SigBridgeRUtils, sigminer, sumup
Reverse enhances: jamba, robustbase

Linking:

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