Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) <doi:10.1038/nmeth.4662>). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) <doi:10.1186/s13059-023-02974-1>).
| Version: | 0.4.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | coop, compiler, cluster, FateID, FNN, fpc, ggplot2, grDevices, harmony, ica, igraph, irlba, leiden, locfit, methods, MASS, Matrix, matrixStats, parallel, pheatmap, princurve, quadprog, randomForest, runner, Rcpp, RColorBrewer, Rtsne, umap, vegan |
| LinkingTo: | Rcpp (≥ 0.11.0) |
| Suggests: | batchelor, DESeq2, knitr, rmarkdown, SingleCellExperiment, slingshot, SummarizedExperiment |
| Published: | 2026-02-23 |
| DOI: | 10.32614/CRAN.package.RaceID |
| Author: | Dominic Grün [aut, cre] |
| Maintainer: | Dominic Grün <dominic.gruen at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | yes |
| SystemRequirements: | C++17 |
| CRAN checks: | RaceID results |
| Reference manual: | RaceID.html , RaceID.pdf |
| Vignettes: |
An introduction to RaceID and StemID. (source, R code) |
| Package source: | RaceID_0.4.0.tar.gz |
| Windows binaries: | r-devel: RaceID_0.4.0.zip, r-release: RaceID_0.4.0.zip, r-oldrel: RaceID_0.4.0.zip |
| macOS binaries: | r-release (arm64): RaceID_0.4.0.tgz, r-oldrel (arm64): RaceID_0.4.0.tgz, r-release (x86_64): RaceID_0.4.0.tgz, r-oldrel (x86_64): RaceID_0.4.0.tgz |
| Old sources: | RaceID archive |
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