Rtsne: T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation

An R wrapper around the fast T-distributed Stochastic Neighbor Embedding implementation by Van der Maaten (see <https://github.com/lvdmaaten/bhtsne/> for more information on the original implementation).

Version:	0.17
Imports:	Rcpp (≥ 0.11.0), stats
LinkingTo:	Rcpp
Suggests:	irlba, testthat
Published:	2023-12-07
DOI:	10.32614/CRAN.package.Rtsne
Author:	Jesse Krijthe [aut, cre], Laurens van der Maaten [cph] (Author of original C++ code)
Maintainer:	Jesse Krijthe <jkrijthe at gmail.com>
License:	file LICENSE
URL:	https://github.com/jkrijthe/Rtsne
NeedsCompilation:	yes
Citation:	Rtsne citation info
Materials:	README, NEWS
CRAN checks:	Rtsne results

Documentation:

Reference manual:

Rtsne.html , Rtsne.pdf

Downloads:

Package source:	Rtsne_0.17.tar.gz
Windows binaries:	r-devel: Rtsne_0.17.zip, r-release: Rtsne_0.17.zip, r-oldrel: Rtsne_0.17.zip
macOS binaries:	r-release (arm64): Rtsne_0.17.tgz, r-oldrel (arm64): Rtsne_0.17.tgz, r-release (x86_64): Rtsne_0.17.tgz, r-oldrel (x86_64): Rtsne_0.17.tgz
Old sources:	Rtsne archive

Reverse dependencies:

Reverse depends:	BiRewire
Reverse imports:	bbknnR, BulkSignalR, caretSDM, CATALYST, ccfindR, celda, CelliD, CellTrails, ChromSCape, chromVAR, CINNA, CiteFuse, clusterWebApp, ComBatFamQC, Coralysis, densityClust, densvis, EmbedSOM, esetVis, EvoPhylo, fastTopics, FateID, FlowSOM, ggpca, ggsem, HDclust, HIPPO, homosapienDEE2CellScore, HVT, iCellR, ILoReg, immunaut, labdsv, Linnorm, M3C, maotai, MatrixQCvis, MBMethPred, Mercator, microbiome, MOFA2, monocle, PAC, pandemonium, pipeComp, polarisR, PsychWordVec, RaceID, randomcoloR, RCSL, regioneReloaded, scater, scMultiSim, Sconify, scStability, scTHI, scTreeViz, Seurat, sincell, singleCellTK, SNPfiltR, stPipe, SubCellBarCode, SuperCell, swaRmverse, systemPipeTools, theftdlc, tomoda, visvow, WormTensor, ZetaSuite
Reverse suggests:	ASURAT, AUCell, BloodCancerMultiOmics2017, CellMixS, clusterExperiment, cola, coRanking, COTAN, diceR, dimRed, dyndimred, Evacluster, fdm2id, HCAData, HDCytoData, iasva, immunarch, inferCSN, iSEEu, looking4clusters, MiscMetabar, mmb, netSmooth, NewWave, NGCHM, notameViz, pctax, proActiv, ProjectionBasedClustering, pRoloc, qmtools, rliger, rSWeeP, SanityR, scBFA, scds, scGPS, seriation, sgdGMF, SingleCellExperiment, spatialHeatmap, SPIAT, stm, structToolbox, systemPipeShiny, tidybulk, tinyarray, topolow, UCSCXenaShiny, velociraptor, zinbwave

Linking:

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