Provides a comprehensive suite of tools for analyzing omics data. It includes
functionalities for alpha diversity analysis, beta diversity analysis, differential
abundance analysis, community assembly analysis, visualization of phylogenetic tree, and
functional enrichment analysis. With a progressive approach, the package offers a range of
analysis methods to explore and understand the complex communities. It is designed to
support researchers and practitioners in conducting in-depth and professional omics data
analysis.
| Version: |
0.1.7 |
| Depends: |
R (≥ 4.2.0) |
| Imports: |
pcutils (≥ 0.2.5), dplyr, readr, ggplot2 (≥ 3.2.0), vegan, magrittr, grDevices, RColorBrewer, ggrepel, reshape2, stats, tibble, utils, ggpubr, patchwork, ggnewscale, ade4, scales |
| Suggests: |
picante, httr, NST, permute, aplot, ggfun, pheatmap, MASS, Rtsne, mixOmics, geosphere, phyloseq, phyloseqGraphTest, plotly, umap, Hmisc, minpack.lm, bbmle, snow, foreach, doSNOW, tidytree, ggtree, ggtreeExtra, vctrs, zoo, ape, DESeq2, limma, ALDEx2, Mfuzz, edgeR, methods, randomForest, knitr, rmarkdown, MetaNet, showtext, jsonlite, prettydoc, readxl, stringr, ggExtra, clipr, zetadiv, ggforce, gggenes, mediation |
| Published: |
2026-02-09 |
| DOI: |
10.32614/CRAN.package.pctax |
| Author: |
Chen Peng  [aut,
cre] |
| Maintainer: |
Chen Peng <bfzede at gmail.com> |
| BugReports: |
https://github.com/Asa12138/pctax/issues |
| License: |
GPL-3 |
| URL: |
https://github.com/Asa12138/pctax |
| NeedsCompilation: |
no |
| Citation: |
pctax citation info |
| Materials: |
README, NEWS |
| CRAN checks: |
pctax results |