MiscMetabar: Miscellaneous Functions for Metabarcoding Analysis

Facilitate the description, transformation, exploration, and reproducibility of metabarcoding analyses. 'MiscMetabar' is mainly built on top of the 'phyloseq', 'dada2' and 'targets' 'R' packages. It helps to build reproducible and robust bioinformatics pipelines in 'R'. 'MiscMetabar' makes ecological analysis of alpha and beta-diversity easier, more reproducible and more powerful by integrating a large number of tools. Important features are described in Taudière A. (2023) <doi:10.21105/joss.06038>.

Version:	0.16.8
Depends:	R (≥ 4.1.0), phyloseq, ggplot2 (≥ 3.5.0), dplyr
Imports:	ape, Biostrings, cli, dada2, divent, lifecycle, purrr, rlang, stats, XVector
Suggests:	adespatial, ALDEx2, ANCOMBC, BiocManager, circlize, ComplexUpset, DECIPHER, DESeq2, devtools, DT, edgeR, formattable, ggalluvial, ggfittext, ggh4x, ggnetwork, ggstatsplot, ggridges, ggVennDiagram, glmulti, gtsummary, grDevices, grid, gridExtra, here, httr, igraph, iNEXT, indicspecies, IRanges, jsonlite, knitr, lefser, magrittr, methods, mia, metagenomeSeq, mixtools, multcompView, networkD3, pak, patchwork, pbapply, permute, phangorn, phyloseqGraphTest, pkgnet, plotly, plyr, reshape2, rmarkdown, rotl, Rtsne, scales, seqinr, SRS, stringr, SummarizedExperiment, testthat (≥ 3.0.0), tibble, tidyr, treemapify, umap, uwot, vegan, venneuler, vctrs, viridis, withr, spelling
Published:	2026-06-08
DOI:	10.32614/CRAN.package.MiscMetabar
Author:	Adrien Taudière [aut, cre, cph]
Maintainer:	Adrien Taudière <adrien.taudiere at zaclys.net>
BugReports:	https://github.com/adrientaudiere/MiscMetabar/issues
License:	AGPL-3
URL:	https://github.com/adrientaudiere/MiscMetabar, https://adrientaudiere.github.io/MiscMetabar/
NeedsCompilation:	no
Language:	en-US
Materials:	README, NEWS
CRAN checks:	MiscMetabar results

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