PSCBS: Analysis of Parent-Specific DNA Copy Numbers

Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.

Version:	0.68.0
Depends:	R (≥ 3.2.0)
Imports:	R.methodsS3 (≥ 1.8.2), R.oo (≥ 1.25.0), R.utils (≥ 2.12.0), R.cache (≥ 0.16.0), matrixStats (≥ 0.62.0), aroma.light (≥ 2.4.0), DNAcopy (≥ 1.42.0), future (≥ 1.28.0), parallel, graphics, grDevices, stats, utils
Suggests:	R.rsp (≥ 0.45.0), R.devices (≥ 2.17.1), ggplot2 (≥ 3.2.1)
Published:	2025-04-18
DOI:	10.32614/CRAN.package.PSCBS
Author:	Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [aut], Venkatraman E. Seshan [aut], Adam B. Olshen [aut], Paul T. Spellman [aut], Richard A. Olshen [aut], Frank E Harrell Jr [ctb] (Weighted quantile estimator adopted from Hmisc::wtd.quantile())
Maintainer:	Henrik Bengtsson <henrikb at braju.com>
BugReports:	https://github.com/HenrikBengtsson/PSCBS/issues
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL:	https://github.com/HenrikBengtsson/PSCBS
NeedsCompilation:	no
Citation:	PSCBS citation info
Materials:	README, NEWS
In views:	Omics
CRAN checks:	PSCBS results

Documentation:

Reference manual:	PSCBS.html , PSCBS.pdf
Vignettes:	Total copy-number segmentation using CBS (source, R code) Parent-specific copy-number segmentation using Paired PSCBS (source, R code)

Downloads:

Package source:	PSCBS_0.68.0.tar.gz
Windows binaries:	r-devel: PSCBS_0.68.0.zip, r-release: PSCBS_0.68.0.zip, r-oldrel: PSCBS_0.68.0.zip
macOS binaries:	r-release (arm64): PSCBS_0.68.0.tgz, r-oldrel (arm64): PSCBS_0.68.0.tgz, r-release (x86_64): PSCBS_0.68.0.tgz, r-oldrel (x86_64): PSCBS_0.68.0.tgz
Old sources:	PSCBS archive

Reverse dependencies:

Reverse imports:	aroma.cn, aroma.core, cfdnakit
Reverse suggests:	jointseg, PureCN

Linking:

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