Plot malaria parasite genetic data on two or more episodes.
Compute per-person posterior probabilities that each
Plasmodium vivax (Pv) recurrence is a recrudescence, relapse,
or reinfection (3Rs) using per-person P. vivax genetic data on two or
more episodes and a statistical model described in
Taylor, Foo and White (2022) <doi:10.1101/2022.11.23.22282669>.
Plot per-recurrence posterior probabilities.
| Version: |
1.0.0 |
| Depends: |
R (≥ 3.5) |
| Imports: |
dplyr, fields, grDevices, igraph, matrixStats, methods, multicool, partitions, purrr, RColorBrewer |
| Suggests: |
codetools, gtools, knitr, Matrix, plyr, R.rsp, rmarkdown, testthat (≥ 3.0.0), tictoc, utils |
| Published: |
2025-11-20 |
| DOI: |
10.32614/CRAN.package.Pv3Rs |
| Author: |
Aimee Taylor 
[aut, cre],
Yong See Foo
[aut],
Tymoteusz Kwiecinski [com] (compiled included macros.Rd),
Duncan Murdoch [ctb] (author of included macros.Rd),
Mans Magnusson [ctb] (author of included msg_progress_bar.R),
Institut Pasteur [cph],
European Union, Project 101110393 [fnd] |
| Maintainer: |
Aimee Taylor <aimee.taylor at pasteur.fr> |
| BugReports: |
https://github.com/aimeertaylor/Pv3Rs/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://aimeertaylor.github.io/Pv3Rs/,
https://github.com/aimeertaylor/Pv3Rs |
| NeedsCompilation: |
no |
| Materials: |
README, NEWS |
| CRAN checks: |
Pv3Rs results |