mvMORPH: Multivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data

Fits multivariate (Brownian Motion, Early Burst, ACDC, Ornstein-Uhlenbeck and Shifts) models of continuous traits evolution on trees and time series. 'mvMORPH' also proposes high-dimensional multivariate comparative tools (linear models using Generalized Least Squares and multivariate tests) based on penalized likelihood. See Clavel et al. (2015) <doi:10.1111/2041-210X.12420>, Clavel et al. (2019) <doi:10.1093/sysbio/syy045>, and Clavel & Morlon (2020) <doi:10.1093/sysbio/syaa010>.

Version:	1.2.1
Depends:	R (≥ 3.5.0), phytools, ape, corpcor, subplex
Imports:	stats, utils, spam, graphics, glassoFast, parallel, pbmcapply
Suggests:	knitr, car
Published:	2024-08-28
DOI:	10.32614/CRAN.package.mvMORPH
Author:	Julien Clavel [aut, cre], with contributions from Aaron King [aut], Emmanuel Paradis [aut]
Maintainer:	Julien Clavel <julien.clavel at hotmail.fr>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2.0)]
URL:	https://github.com/JClavel/mvMORPH
NeedsCompilation:	yes
Citation:	mvMORPH citation info
Materials:	README, NEWS
In views:	Phylogenetics
CRAN checks:	mvMORPH results

Documentation:

Reference manual:	mvMORPH.html , mvMORPH.pdf
Vignettes:	How to use mvMORPH? (source, R code) mvMORPH: an R package for fitting multivariate evolutionary models (source, R code)

Downloads:

Package source:	mvMORPH_1.2.1.tar.gz
Windows binaries:	r-devel: mvMORPH_1.2.1.zip, r-release: mvMORPH_1.2.1.zip, r-oldrel: mvMORPH_1.2.1.zip
macOS binaries:	r-release (arm64): mvMORPH_1.2.1.tgz, r-oldrel (arm64): mvMORPH_1.2.1.tgz, r-release (x86_64): mvMORPH_1.2.1.tgz, r-oldrel (x86_64): mvMORPH_1.2.1.tgz
Old sources:	mvMORPH archive

Reverse dependencies:

Reverse imports:	bifrost, ratematrix
Reverse suggests:	GeometricMorphometricsMix, mvSLOUCH, RRphylo

Linking:

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