RRphylo: Phylogenetic Ridge Regression Methods for Comparative Studies

Functions for phylogenetic analysis (Castiglione et al., 2018 <doi:10.1111/2041-210X.12954>). The functions perform the estimation of phenotypic evolutionary rates, identification of phenotypic evolutionary rate shifts, quantification of direction and size of evolutionary change in multivariate traits, the computation of ontogenetic shape vectors and test for morphological convergence.

Version:	3.0.2
Depends:	R (≥ 3.6.0), emmeans (≥ 1.4.3)
Imports:	ape, phytools, foreach, doParallel, parallel
Suggests:	phangorn, rlist, scales, R.utils, cluster, RColorBrewer, nlme, car, smatr, picante, vegan, ddpcr, geomorph, rmarkdown, knitr, kableExtra, plotrix, pdftools, rgl, mvMORPH, ggplot2, qpdf, inflection, Rvcg, Morpho, evolqg, manipulate, markdown, Rphylopars, phylolm, webshot2, testthat (≥ 3.0.0)
Published:	2026-01-10
DOI:	10.32614/CRAN.package.RRphylo
Author:	Pasquale Raia [aut], Silvia Castiglione [aut, cre], Carmela Serio [aut], Giorgia Girardi [aut], Alessandro Mondanaro [aut], Marina Melchionna [aut], Mirko Di Febbraro [aut], Antonio Profico [aut], Francesco Carotenuto [aut]
Maintainer:	Silvia Castiglione <silvia.castiglione at unina.it>
License:	GPL-2
NeedsCompilation:	no
Citation:	RRphylo citation info
Materials:	README
In views:	Paleontology
CRAN checks:	RRphylo results

Documentation:

Reference manual:	RRphylo.html , RRphylo.pdf
Vignettes:	Alternative-trees (source) Plotting-tools (source) RRphylo (source) Tree-Manipulation (source) overfit (source) search.conv (source) search.shift (source) search.trend (source)

Downloads:

Package source:	RRphylo_3.0.2.tar.gz
Windows binaries:	r-devel: RRphylo_3.0.2.zip, r-release: RRphylo_3.0.2.zip, r-oldrel: RRphylo_3.0.2.zip
macOS binaries:	r-release (arm64): RRphylo_3.0.2.tgz, r-oldrel (arm64): RRphylo_3.0.2.tgz, r-release (x86_64): RRphylo_3.0.2.tgz, r-oldrel (x86_64): RRphylo_3.0.2.tgz
Old sources:	RRphylo archive

Reverse dependencies:

Reverse imports:

RRgeo, RRmorph

Linking:

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