Rphylopars: Phylogenetic Comparative Tools for Missing Data and Within-Species Variation

Tools for performing phylogenetic comparative methods for datasets with with multiple observations per species (intraspecific variation or measurement error) and/or missing data (Goolsby et al. 2017). Performs ancestral state reconstruction and missing data imputation on the estimated evolutionary model, which can be specified as Brownian Motion, Ornstein-Uhlenbeck, Early-Burst, Pagel's lambda, kappa, or delta, or a star phylogeny.

Version:	0.3.10
Depends:	ape
Imports:	Rcpp, doBy, phylolm, phytools, Matrix, MASS, numDeriv
LinkingTo:	Rcpp, RcppArmadillo
Published:	2024-01-18
DOI:	10.32614/CRAN.package.Rphylopars
Author:	Eric W. Goolsby [aut, cre], Jorn Bruggeman [aut], Cecile Ane [aut]
Maintainer:	Eric W. Goolsby <eric.goolsby.evolution at gmail.com>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL:	https://github.com/ericgoolsby/Rphylopars/wiki
NeedsCompilation:	yes
Materials:	README
In views:	MissingData, Phylogenetics
CRAN checks:	Rphylopars results

Documentation:

Reference manual:

Rphylopars.html , Rphylopars.pdf

Downloads:

Package source:	Rphylopars_0.3.10.tar.gz
Windows binaries:	r-devel: Rphylopars_0.3.10.zip, r-release: Rphylopars_0.3.10.zip, r-oldrel: Rphylopars_0.3.10.zip
macOS binaries:	r-release (arm64): Rphylopars_0.3.10.tgz, r-oldrel (arm64): Rphylopars_0.3.10.tgz, r-release (x86_64): Rphylopars_0.3.10.tgz, r-oldrel (x86_64): Rphylopars_0.3.10.tgz
Old sources:	Rphylopars archive

Reverse dependencies:

Reverse imports:	RRgeo
Reverse suggests:	phylosem, RRphylo

Linking:

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