mvSLOUCH: Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses

Fits multivariate Ornstein-Uhlenbeck types of models to continues trait data from species related by a common evolutionary history. See K. Bartoszek, J, Pienaar, P. Mostad, S. Andersson, T. F. Hansen (2012) <doi:10.1016/j.jtbi.2012.08.005> and K. Bartoszek, and J. Tredgett Clarke, J. Fuentes-Gonzalez, V. Mitov, J. Pienaar, M. Piwczynski, R. Puchalka, K. Spalik, K. L. Voje (2024) <doi:10.1111/2041-210X.14376>. The suggested PCMBaseCpp package (which significantly speeds up the likelihood calculations) can be obtained from <https://github.com/venelin/PCMBaseCpp/>.

Version:	2.7.7
Depends:	R (≥ 3.5.0), abind
Imports:	ape (≥ 5.3), graphics, methods, mvtnorm, Matrix, ouch, PCMBase (≥ 1.2.10), stats, matrixcalc
Suggests:	PCMBaseCpp (≥ 0.1.9), ggplot2, knitr, rmarkdown, mvMORPH, testthat
Published:	2025-07-24
DOI:	10.32614/CRAN.package.mvSLOUCH
Author:	Krzysztof Bartoszek [cre, aut], John Clarke [ctb], Jesualdo Fuentes-Gonzalez [ctb], Jason Pienaar [ctb]
Maintainer:	Krzysztof Bartoszek <krzbar at protonmail.ch>
License:	GPL-2 | GPL-3 | file LICENCE [expanded from: GPL (≥ 2) | file LICENCE]
NeedsCompilation:	no
Citation:	mvSLOUCH citation info
CRAN checks:	mvSLOUCH results

Documentation:

Reference manual:	mvSLOUCH.html , mvSLOUCH.pdf
Vignettes:	Getting started (source, R code)

Downloads:

Package source:	mvSLOUCH_2.7.7.tar.gz
Windows binaries:	r-devel: mvSLOUCH_2.7.7.zip, r-release: mvSLOUCH_2.7.7.zip, r-oldrel: mvSLOUCH_2.7.7.zip
macOS binaries:	r-release (arm64): mvSLOUCH_2.7.7.tgz, r-oldrel (arm64): mvSLOUCH_2.7.7.tgz, r-release (x86_64): mvSLOUCH_2.7.7.tgz, r-oldrel (x86_64): mvSLOUCH_2.7.7.tgz
Old sources:	mvSLOUCH archive

Reverse dependencies:

Reverse imports:	pcmabc
Reverse suggests:	GLSME, PCMBase

Linking:

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