statgenMPP: QTL Mapping for Multi Parent Populations
For Multi Parent Populations (MPP) Identity By Descend (IBD) probabilities are computed using Hidden Markov Models. These probabilities are then used in a mixed model approach for QTL Mapping as described in Li et al. (<doi:10.1007/s00122-021-03919-7>).
| Version: | 1.0.4 |
| Depends: | R (≥ 3.6), statgenGWAS (≥ 1.0.9) |
| Imports: | data.table, foreach, ggplot2, gridExtra, LMMsolver (≥ 1.0.5), rlang, scales, spam, statgenIBD (≥ 1.0.8) |
| Suggests: | rmarkdown, knitr, tinytest |
| Published: | 2025-02-11 |
| DOI: | 10.32614/CRAN.package.statgenMPP |
| Author: | Martin Boer  [aut],
Wenhao Li [aut],
Bart-Jan van Rossum
[aut, cre],
Fred van Eeuwijk
[ctb] |
| Maintainer: | Bart-Jan van Rossum <bart-jan.vanrossum at wur.nl> |
| BugReports: | https://github.com/Biometris/statgenMPP/issues |
| License: | GPL (≥ 3) |
| URL: | https://biometris.github.io/statgenMPP/index.html, https://github.com/Biometris/statgenMPP/ |
| NeedsCompilation: | no |
| Citation: | statgenMPP citation info |
| Materials: | README, NEWS |
| In views: | Agriculture |
| CRAN checks: | statgenMPP results |
Documentation:
| Reference manual: | statgenMPP.html , statgenMPP.pdf |
| Vignettes: |
QTL Mapping in Multi-Parent Populations (source, R code) |
Downloads:
| Package source: | statgenMPP_1.0.4.tar.gz |
| Windows binaries: | r-devel: statgenMPP_1.0.4.zip, r-release: statgenMPP_1.0.4.zip, r-oldrel: statgenMPP_1.0.4.zip |
| macOS binaries: | r-release (arm64): statgenMPP_1.0.4.tgz, r-oldrel (arm64): statgenMPP_1.0.4.tgz, r-release (x86_64): statgenMPP_1.0.4.tgz, r-oldrel (x86_64): statgenMPP_1.0.4.tgz |
| Old sources: | statgenMPP archive |
Linking:
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