statgenMPP 1.0.4

• readRABBITMPP now reads the output files producted by open source version of RABBIT, available at https://github.com/Biometris/RABBIT. Older files created using Mathematica are still read as well.
• A new plot (plotType = "parCIs") is now available for plotting the parental effects and the confidence intervals around them.

statgenMPP 1.0.3

• The output of selQTLMPP now contains the standard errors of the effects. The standard errors are added in both the full output (GWAResult) and the table with QTLs (signSnp).
• The output of the two plots in QTLProfileExt is properly aligned again.
• Functions no longer rely on soft-deprecated ggplot2 functions.

statgenMPP 1.0.2

• A minor bug in the summary for gDataMPP objects is fixed. Now the correct number of genotypes is shown also when there is only one cross.
• A citation file was added.

statgenMPP 1.0.1.1

• Internal fix. No user visible changes.

statgenMPP 1.0.1

• The logic in the scan process is improved, leading to much lower computation times. * Computations can now be done in parallel by registering a parallel back-end and setting parallel = TRUE in the selQTLMPP function.
• It is now possible to include a polygenic effect in the models to correct for background genetic information.
• A new function createGDataMPP is added to directly create a gDataMPP object from an IBDprob object (as created by statgenIBD) and a data.frame with phenotypic data.
• readRABBIT is renamed to readRABBITMPP to prevent future conflicts with a similar function in statgenIBD
• The trait column in the example data is renamed from “pheno” to “yield”.

statgenMPP 1.0.0

• Initial CRAN release