Modelling interacting microbial populations - example applications include human gut microbiota, rumen microbiota and phytoplankton. Solves a system of ordinary differential equations to simulate microbial growth and resource uptake over time. This version contains network visualisation functions.
| Version: | 1.6 |
| Depends: | deSolve, visNetwork |
| Imports: | testthat, methods |
| Suggests: | rmarkdown, R.rsp, knitr, webshot |
| Published: | 2022-02-03 |
| DOI: | 10.32614/CRAN.package.microPop |
| Author: | Helen Kettle [aut, cre] |
| Maintainer: | Helen Kettle <Helen.Kettle at bioss.ac.uk> |
| License: | GPL-3 | file LICENSE |
| URL: | https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.12873 |
| NeedsCompilation: | no |
| CRAN checks: | microPop results |
| Reference manual: | microPop.html , microPop.pdf |
| Vignettes: |
microPop Tutorial (source, R code) Networks (source, R code) |
| Package source: | microPop_1.6.tar.gz |
| Windows binaries: | r-devel: microPop_1.6.zip, r-release: microPop_1.6.zip, r-oldrel: microPop_1.6.zip |
| macOS binaries: | r-release (arm64): microPop_1.6.tgz, r-oldrel (arm64): microPop_1.6.tgz, r-release (x86_64): microPop_1.6.tgz, r-oldrel (x86_64): microPop_1.6.tgz |
| Old sources: | microPop archive |
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