hommel: Methods for Closed Testing with Simes Inequality, in Particular Hommel's Method

Provides methods for closed testing using Simes local tests. In particular, calculates adjusted p-values for Hommel's multiple testing method, and provides lower confidence bounds for true discovery proportions. A robust but more conservative variant of the closed testing procedure that does not require the assumption of Simes inequality is also implemented. The methods have been described in detail in Goeman et al (Biometrika 106, 841-856, 2019).

Version:	1.8
Imports:	Rcpp, methods
LinkingTo:	Rcpp
Published:	2025-01-14
DOI:	10.32614/CRAN.package.hommel
Author:	Jelle Goeman [aut, cre], Rosa Meijer [aut], Thijmen Krebs [aut]
Maintainer:	Jelle Goeman <j.j.goeman at lumc.nl>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation:	yes
Materials:	ChangeLog
In views:	Omics
CRAN checks:	hommel results

Documentation:

Reference manual:

hommel.html , hommel.pdf

Downloads:

Package source:	hommel_1.8.tar.gz
Windows binaries:	r-devel: hommel_1.8.zip, r-release: hommel_1.8.zip, r-oldrel: hommel_1.8.zip
macOS binaries:	r-release (arm64): hommel_1.8.tgz, r-oldrel (arm64): hommel_1.8.tgz, r-release (x86_64): hommel_1.8.tgz, r-oldrel (x86_64): hommel_1.8.tgz
Old sources:	hommel archive

Reverse dependencies:

Reverse depends:	rSEA
Reverse imports:	ARIbrain, cherry, HIMA, MultiGroupSequential

Linking:

Please use the canonical form https://CRAN.R-project.org/package=hommel to link to this page.