hierfstat: Estimation and Tests of Hierarchical F-Statistics

Estimates hierarchical F-statistics from haploid or diploid genetic data with any numbers of levels in the hierarchy, following the algorithm of Yang (Evolution(1998), 52:950). Tests via randomisations the significance of each F and variance components, using the likelihood-ratio statistics G (Goudet et al. (1996) <https://academic.oup.com/genetics/article/144/4/1933/6017091>). Estimates genetic diversity statistics for haploid and diploid genetic datasets in various formats, including inbreeding and coancestry coefficients, and population specific F-statistics following Weir and Goudet (2017) <https://academic.oup.com/genetics/article/206/4/2085/6072590>.

Version:	0.5-11
Depends:	R (≥ 2.10)
Imports:	ade4, adegenet, gaston, gtools, methods
Suggests:	ape, pegas, knitr, rmarkdown, testthat
Published:	2022-05-05
DOI:	10.32614/CRAN.package.hierfstat
Author:	Jerome Goudet [aut, cre], Thibaut Jombart [aut], Zhian N. Kamvar [ctb], Eric Archer [ctb], Olivier Hardy [ctb]
Maintainer:	Jerome Goudet <jerome.goudet at unil.ch>
BugReports:	https://github.com/jgx65/hierfstat/issues
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL:	https://www.r-project.org, https://github.com/jgx65/hierfstat
NeedsCompilation:	no
CRAN checks:	hierfstat results

Documentation:

Reference manual:	hierfstat.html , hierfstat.pdf
Vignettes:	Hierfstat latest features (source, R code) Importing data in Hierfstat (source, R code)

Downloads:

Package source:	hierfstat_0.5-11.tar.gz
Windows binaries:	r-devel: hierfstat_0.5-11.zip, r-release: hierfstat_0.5-11.zip, r-oldrel: hierfstat_0.5-11.zip
macOS binaries:	r-release (arm64): hierfstat_0.5-11.tgz, r-oldrel (arm64): hierfstat_0.5-11.tgz, r-release (x86_64): hierfstat_0.5-11.tgz, r-oldrel (x86_64): hierfstat_0.5-11.tgz
Old sources:	hierfstat archive

Reverse dependencies:

Reverse imports:	dartR.sim, GenomeAdmixR, graph4lg, wingen
Reverse suggests:	adegenet, dartR, dartR.base, tidypopgen

Linking:

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