gaston: Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models

Manipulation of genetic data (SNPs). Computation of GRM and dominance matrix, LD, heritability with efficient algorithms for linear mixed model (AIREML). Dandine et al <doi:10.1159/000488519>.

Version:	1.6
Depends:	Rcpp, RcppParallel, methods
LinkingTo:	Rcpp, RcppParallel, RcppEigen
Suggests:	knitr, RcppEigen
Published:	2023-12-07
DOI:	10.32614/CRAN.package.gaston
Author:	Hervé Perdry [cre, aut, cph], Claire Dandine-Roulland [aut, cph], Deepak Bandyopadhyay [cph] (C++ gzstream class), Lutz Kettner [cph] (C++ gzstream class)
Maintainer:	Hervé Perdry <herve.perdry at universite-paris-saclay.fr>
License:	GPL-3
NeedsCompilation:	yes
Materials:	NEWS
CRAN checks:	gaston results

Documentation:

Reference manual:	gaston.html , gaston.pdf
Vignettes:	gaston faq (source, R code) gaston package (source, R code)

Downloads:

Package source:	gaston_1.6.tar.gz
Windows binaries:	r-devel: gaston_1.6.zip, r-release: gaston_1.6.zip, r-oldrel: gaston_1.6.zip
macOS binaries:	r-release (arm64): gaston_1.6.tgz, r-oldrel (arm64): gaston_1.6.tgz, r-release (x86_64): gaston_1.6.tgz, r-oldrel (x86_64): gaston_1.6.tgz
Old sources:	gaston archive

Reverse dependencies:

Reverse depends:	milorGWAS, Ravages
Reverse imports:	hierfstat, RAINBOWR, rNeighborGWAS, rNeighborQTL, snpsettest
Reverse linking to:	milorGWAS, Ravages
Reverse suggests:	bigsnpr

Linking:

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