ecoCopula: Graphical Modelling and Ordination using Copulas

Creates 'graphs' of species associations (interactions) and ordination biplots from co-occurrence data by fitting discrete gaussian copula graphical models. Methods described in Popovic, GC., Hui, FKC., Warton, DI., (2018) <doi:10.1016/j.jmva.2017.12.002>.

Version:	1.0.6
Depends:	R (≥ 3.5.0), mvabund (≥ 4.2)
Imports:	glasso, plyr, sna, MASS, tweedie, igraph, betareg, doParallel, mgcv, glm2, ordinal, compiler, foreach, stats
Suggests:	knitr, rmarkdown, tidyr, ggplot2, RColorBrewer, ggraph, labdsv, tidygraph, grDevices
Published:	2025-12-04
DOI:	10.32614/CRAN.package.ecoCopula
Author:	Gordana Popovic [aut], David Warton [ctb, cre], Francis K.C. Hui [ctb], Michelle Lim [ctb]
Maintainer:	David Warton <david.warton at unsw.edu.au>
License:	LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2.1)]
URL:	https://eco-stats.github.io/ecoCopula/
NeedsCompilation:	no
Citation:	ecoCopula citation info
Materials:	README, NEWS
In views:	Environmetrics
CRAN checks:	ecoCopula results

Documentation:

Reference manual:	ecoCopula.html , ecoCopula.pdf
Vignettes:	ecoCopula (source)

Downloads:

Package source:	ecoCopula_1.0.6.tar.gz
Windows binaries:	r-devel: ecoCopula_1.0.6.zip, r-release: ecoCopula_1.0.6.zip, r-oldrel: ecoCopula_1.0.2.zip
macOS binaries:	r-release (arm64): ecoCopula_1.0.6.tgz, r-oldrel (arm64): ecoCopula_1.0.6.tgz, r-release (x86_64): ecoCopula_1.0.6.tgz, r-oldrel (x86_64): ecoCopula_1.0.6.tgz
Old sources:	ecoCopula archive

Reverse dependencies:

Reverse imports:

ecopower, ecostats

Linking:

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