A toolkit to detect clusters from distance matrices. The distance matrices are assumed to be calculated between the cells of multiple animals ('Caenorhabditis elegans') from input time-series matrices. Some functions for generating distance matrices, performing clustering, evaluating the clustering, and visualizing the results of clustering and evaluation are available. We're also providing the download function to retrieve the calculated distance matrices from 'figshare' <https://figshare.com>.
| Version: | 0.1.2 |
| Depends: | R (≥ 4.1.0) |
| Imports: | rTensor, usedist, dtwclust, clusterSim, clValid, aricode, cluster, ggplot2, Rtsne, uwot, factoextra, ggrepel, cowplot, methods |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2025-07-21 |
| DOI: | 10.32614/CRAN.package.WormTensor |
| Author: | Kentaro Yamamoto [aut, cre], Koki Tsuyuzaki [aut], Itoshi Nikaido [aut] |
| Maintainer: | Kentaro Yamamoto <yamaken37.the.answer at gmail.com> |
| BugReports: | https://github.com/rikenbit/WormTensor/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/rikenbit/WormTensor |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | WormTensor results |
| Reference manual: | WormTensor.html , WormTensor.pdf |
| Vignettes: |
WormTensor (source, R code) |
| Package source: | WormTensor_0.1.2.tar.gz |
| Windows binaries: | r-devel: WormTensor_0.1.2.zip, r-release: WormTensor_0.1.2.zip, r-oldrel: WormTensor_0.1.2.zip |
| macOS binaries: | r-release (arm64): WormTensor_0.1.2.tgz, r-oldrel (arm64): WormTensor_0.1.2.tgz, r-release (x86_64): WormTensor_0.1.2.tgz, r-oldrel (x86_64): WormTensor_0.1.2.tgz |
| Old sources: | WormTensor archive |
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