FME: A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis

Provides functions to help in fitting models to data, to perform Monte Carlo, sensitivity and identifiability analysis. It is intended to work with models be written as a set of differential equations that are solved either by an integration routine from package 'deSolve', or a steady-state solver from package 'rootSolve'. However, the methods can also be used with other types of functions.

Version:	1.3.6.4
Depends:	R (≥ 2.6), deSolve, rootSolve, coda
Imports:	minpack.lm, MASS, graphics, grDevices, stats, utils, minqa
Suggests:	diagram
Published:	2025-07-25
DOI:	10.32614/CRAN.package.FME
Author:	Karline Soetaert [aut, cre], Thomas Petzoldt [aut]
Maintainer:	Karline Soetaert <karline.soetaert at nioz.nl>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL:	http://fme.r-forge.r-project.org/
NeedsCompilation:	yes
Citation:	FME citation info
In views:	Bayesian, DifferentialEquations
CRAN checks:	FME results

Documentation:

Reference manual:

FME.html , FME.pdf

Vignettes:

1. Inverse Modelling, Sensitivity and Monte Carlo Analysis in R Using Package FME (source, R code) 2. Sensitivity, Calibration, Identifiability, Monte Carlo Analysis of a Dynamic Simulation Model (source, R code) 3. Tests of the Markov Chain Monte Carlo Implementation (source, R code) 4. Sensitivity, Calibration, Identifiability, Monte Carlo Analysis of a Nonlinear Model (source, R code) 5. Sensitivity, Calibration, Identifiability, Monte Carlo Analysis of a Steady-State Model (source, R code)

Downloads:

Package source:	FME_1.3.6.4.tar.gz
Windows binaries:	r-devel: FME_1.3.6.4.zip, r-release: FME_1.3.6.4.zip, r-oldrel: FME_1.3.6.4.zip
macOS binaries:	r-release (arm64): FME_1.3.6.4.tgz, r-oldrel (arm64): FME_1.3.6.4.tgz, r-release (x86_64): FME_1.3.6.4.tgz, r-oldrel (x86_64): FME_1.3.6.4.tgz
Old sources:	FME archive

Reverse dependencies:

Reverse depends:	DivE
Reverse imports:	biogrowth, bioinactivation, cellmigRation, ConsReg, GREENeR, growthrates
Reverse suggests:	airGR, babelmixr2, deSolve, simecol, SoilR

Linking:

Please use the canonical form https://CRAN.R-project.org/package=FME to link to this page.