Last updated on 2025-07-28 13:50:15 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/108s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.519, system: 0.043, elapsed: 2.366 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.966, system: 0.100, elapsed: 13.414 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.192, system: 0.016, elapsed: 0.241 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.769, system: 0.214, elapsed: 5.546 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.004, elapsed: 0.196 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.152, system: 0.403, elapsed: 22.527 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.484, system: 0.043, elapsed: 2.407 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.946, system: 0.074, elapsed: 12.118 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.015, elapsed: 0.280 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.652, system: 0.170, elapsed: 5.343 seconds]
Computing values for grid cells...
... done. [user: 0.161, system: 0.002, elapsed: 0.244 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.959, system: 0.329, elapsed: 21.206 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.567, system: 0.034, elapsed: 2.130 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.949, system: 0.110, elapsed: 12.374 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.015, elapsed: 0.260 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.840, system: 0.252, elapsed: 6.192 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.005, elapsed: 0.317 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.145, system: 0.248, elapsed: 1.059 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.474, system: 0.693, elapsed: 23.319 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.478, system: 0.058, elapsed: 1.749 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.071, system: 0.147, elapsed: 12.914 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.181, system: 0.010, elapsed: 0.193 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.608, system: 0.178, elapsed: 4.436 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.004, elapsed: 0.250 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.224, system: 0.506, elapsed: 14.339 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.372, system: 0.941, elapsed: 34.701 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [78s/104s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.531, system: 0.044, elapsed: 2.327 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.988, system: 0.095, elapsed: 13.369 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.014, elapsed: 0.348 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.568, system: 0.195, elapsed: 5.472 seconds]
Computing values for grid cells...
... done. [user: 0.160, system: 0.004, elapsed: 0.246 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.974, system: 0.375, elapsed: 22.631 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.513, system: 0.037, elapsed: 2.076 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.990, system: 0.080, elapsed: 12.985 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.183, system: 0.014, elapsed: 0.230 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.528, system: 0.151, elapsed: 4.667 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.005, elapsed: 0.221 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.907, system: 0.312, elapsed: 20.888 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.537, system: 0.033, elapsed: 1.976 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.963, system: 0.066, elapsed: 11.519 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.010, elapsed: 0.205 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.395, system: 0.147, elapsed: 3.811 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.003, elapsed: 0.218 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.044, system: 0.200, elapsed: 0.856 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.935, system: 0.497, elapsed: 19.380 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.493, system: 0.041, elapsed: 1.925 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.053, system: 0.172, elapsed: 13.053 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.192, system: 0.015, elapsed: 0.382 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.576, system: 0.222, elapsed: 5.002 seconds]
Computing values for grid cells...
... done. [user: 0.156, system: 0.004, elapsed: 0.172 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.059, system: 0.463, elapsed: 12.620 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.167, system: 0.957, elapsed: 34.030 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64