Last updated on 2025-12-07 07:50:44 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [87s/119s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.597, system: 0.046, elapsed: 2.541 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.476, system: 0.116, elapsed: 12.652 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.199, system: 0.014, elapsed: 0.298 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.852, system: 0.199, elapsed: 4.729 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.006, elapsed: 0.199 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.867, system: 0.413, elapsed: 21.171 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.573, system: 0.043, elapsed: 1.715 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.645, system: 0.172, elapsed: 11.622 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.019, elapsed: 0.315 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.096, system: 0.276, elapsed: 5.757 seconds]
Computing values for grid cells...
... done. [user: 0.189, system: 0.011, elapsed: 0.256 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.263, system: 0.568, elapsed: 20.469 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.733, system: 0.074, elapsed: 2.317 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.914, system: 0.305, elapsed: 15.267 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.217, system: 0.019, elapsed: 0.363 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.076, system: 0.279, elapsed: 6.524 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.008, elapsed: 0.241 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.263, system: 0.249, elapsed: 1.169 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.055, system: 0.997, elapsed: 27.048 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.768, system: 0.092, elapsed: 2.865 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.657, system: 0.226, elapsed: 15.782 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.201, system: 0.014, elapsed: 0.274 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.082, system: 0.279, elapsed: 5.649 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.011, elapsed: 0.223 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.183, system: 0.900, elapsed: 16.848 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.716, system: 1.558, elapsed: 42.631 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [91s/162s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.758, system: 0.074, elapsed: 3.015 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 11.189, system: 0.242, elapsed: 20.130 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.206, system: 0.019, elapsed: 0.414 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.908, system: 0.272, elapsed: 6.440 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.007, elapsed: 0.256 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.809, system: 0.644, elapsed: 31.210 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.641, system: 0.045, elapsed: 2.589 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 11.364, system: 0.313, elapsed: 20.869 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.205, system: 0.022, elapsed: 0.390 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.129, system: 0.317, elapsed: 7.422 seconds]
Computing values for grid cells...
... done. [user: 0.186, system: 0.011, elapsed: 0.295 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.090, system: 0.749, elapsed: 32.585 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.663, system: 0.051, elapsed: 2.802 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 11.132, system: 0.144, elapsed: 21.991 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.012, elapsed: 0.444 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.834, system: 0.180, elapsed: 7.280 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.003, elapsed: 0.327 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.152, system: 0.240, elapsed: 1.248 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.820, system: 0.676, elapsed: 35.357 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.560, system: 0.033, elapsed: 2.607 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 11.149, system: 0.085, elapsed: 18.581 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.011, elapsed: 0.484 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.777, system: 0.192, elapsed: 8.710 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.004, elapsed: 0.441 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.678, system: 0.496, elapsed: 21.701 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 28.192, system: 0.846, elapsed: 53.850 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64