Last updated on 2025-11-16 07:50:23 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/106s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.581, system: 0.055, elapsed: 4.165 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.679, system: 0.186, elapsed: 23.426 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.017, elapsed: 0.314 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.035, system: 0.237, elapsed: 5.991 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.004, elapsed: 0.239 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.235, system: 0.529, elapsed: 35.457 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.495, system: 0.034, elapsed: 1.718 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.546, system: 0.065, elapsed: 8.865 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.168, system: 0.009, elapsed: 0.177 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.474, system: 0.147, elapsed: 3.907 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.003, elapsed: 0.180 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.364, system: 0.279, elapsed: 15.409 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.353, system: 0.023, elapsed: 1.384 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 7.513, system: 0.033, elapsed: 7.607 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.161, system: 0.008, elapsed: 0.175 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.272, system: 0.156, elapsed: 3.941 seconds]
Computing values for grid cells...
... done. [user: 0.187, system: 0.020, elapsed: 0.346 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.219, system: 0.262, elapsed: 1.263 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.296, system: 0.540, elapsed: 15.472 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.697, system: 0.059, elapsed: 2.159 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.656, system: 0.165, elapsed: 11.750 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.181, system: 0.010, elapsed: 0.192 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.394, system: 0.146, elapsed: 3.567 seconds]
Computing values for grid cells...
... done. [user: 0.153, system: 0.003, elapsed: 0.157 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.532, system: 0.649, elapsed: 12.377 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.223, system: 1.053, elapsed: 30.877 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [85s/144s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.734, system: 0.071, elapsed: 2.769 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.803, system: 0.343, elapsed: 16.272 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.020, elapsed: 0.368 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.950, system: 0.312, elapsed: 5.740 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.009, elapsed: 0.231 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.428, system: 0.790, elapsed: 26.395 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.877, system: 0.096, elapsed: 2.439 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.546, system: 0.218, elapsed: 13.200 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.201, system: 0.014, elapsed: 0.434 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.950, system: 0.203, elapsed: 7.863 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.006, elapsed: 0.366 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.301, system: 0.578, elapsed: 25.271 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.613, system: 0.042, elapsed: 3.194 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.588, system: 0.117, elapsed: 15.584 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.191, system: 0.012, elapsed: 0.319 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.827, system: 0.196, elapsed: 7.724 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.009, elapsed: 0.315 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.119, system: 0.273, elapsed: 1.184 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.165, system: 0.683, elapsed: 29.548 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.592, system: 0.032, elapsed: 2.583 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.518, system: 0.065, elapsed: 17.440 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.194, system: 0.013, elapsed: 0.334 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.737, system: 0.173, elapsed: 7.254 seconds]
Computing values for grid cells...
... done. [user: 0.169, system: 0.004, elapsed: 0.419 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.615, system: 0.500, elapsed: 22.995 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.497, system: 0.812, elapsed: 52.255 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64