Last updated on 2025-12-07 07:50:38 CET.
| Package | ERROR | OK |
|---|---|---|
| inferCSN | 1 | 12 |
| thisutils | 13 |
Current CRAN status: ERROR: 1, OK: 12
Version: 1.2.0
Check: examples
Result: ERROR
Running examples in ‘inferCSN-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_dynamic_networks
> ### Title: Plot dynamic networks
> ### Aliases: plot_dynamic_networks
>
> ### ** Examples
>
> data(example_matrix)
> network <- inferCSN(example_matrix)[1:100, ]
ℹ [2025-12-06 14:44:20] Running for <dense matrix>.
◌ [2025-12-06 14:44:20] Checking input parameters...
ℹ [2025-12-06 14:44:20] Using `L0` sparse regression model
ℹ [2025-12-06 14:44:20] Using 1 core
ℹ [2025-12-06 14:44:20] Building results
✔ [2025-12-06 14:44:20] Run done.
> network$celltype <- c(
+ rep("cluster1", 20),
+ rep("cluster2", 20),
+ rep("cluster3", 20),
+ rep("cluster5", 20),
+ rep("cluster6", 20)
+ )
>
> celltypes_order <- c(
+ "cluster5", "cluster3",
+ "cluster2", "cluster1",
+ "cluster6"
+ )
>
> plot_dynamic_networks(
+ network,
+ celltypes_order = celltypes_order
+ )
Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
ℹ The deprecated feature was likely used in the inferCSN package.
Please report the issue at <https://github.com/mengxu98/inferCSN/issues>.
>
> plot_dynamic_networks(
+ network,
+ celltypes_order = celltypes_order[1:3]
+ )
>
> plot_dynamic_networks(
+ network,
+ celltypes_order = celltypes_order,
+ plot_type = "ggplotly"
+ )
Error in loadNamespace(x) : there is no package called ‘plotly’
Calls: plot_dynamic_networks ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13