CRAN Package Check Results for Maintainer ‘Guangchuang Yu <guangchuangyu at gmail.com>’

Last updated on 2025-05-03 22:50:28 CEST.

Package ERROR NOTE OK
aplot 13
aplotExtra 13
badger 2 11
dlstats 13
emojifont 3 10
fanyi 13
ggbreak 13
ggfun 10 3
ggimage 10 3
ggplotify 13
ggtangle 10 3
gson 13
hexSticker 3 10
meme 13
mirrorselect 13
plotbb 13
rvcheck 13
scatterpie 13
scholar 13
seqmagick 10 3
shadowtext 13
shinyTempSignal 10 3
TDbook 2 11
tidydr 13
tidytree 13
wget 13
wikiprofiler 4 9
yulab.utils 13

Package aplot

Current CRAN status: OK: 13

Package aplotExtra

Current CRAN status: OK: 13

Package badger

Current CRAN status: NOTE: 2, OK: 11

Version: 0.2.4
Check: DESCRIPTION meta-information
Result: NOTE Author field differs from that derived from Authors@R Author: ‘Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Gregor de Cillia [ctb], Dirk Eddelbuettel [ctb], Maëlle Salmon [ctb], Robrecht Cannoodt [ctb] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Alexander Rossell Hayes [ctb] (<https://orcid.org/0000-0001-9412-0457>, rossellhayes), Waldir Leoncio [ctb], Matthew Schuelke [ctb] (<https://orcid.org/0000-0001-5755-1725>, the-mad-statter)’ Authors@R: ‘Guangchuang Yu [aut, cre] (ORCID: <https://orcid.org/0000-0002-6485-8781>), Gregor de Cillia [ctb], Dirk Eddelbuettel [ctb], Maëlle Salmon [ctb], Robrecht Cannoodt [ctb] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Alexander Rossell Hayes [ctb] (ORCID: <https://orcid.org/0000-0001-9412-0457>, github: rossellhayes), Waldir Leoncio [ctb], Matthew Schuelke [ctb] (ORCID: <https://orcid.org/0000-0001-5755-1725>, github: the-mad-statter)’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package dlstats

Current CRAN status: OK: 13

Package emojifont

Current CRAN status: NOTE: 3, OK: 10

Version: 0.5.5
Check: installed package size
Result: NOTE installed size is 7.0Mb sub-directories of 1Mb or more: emoji_fonts 6.4Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package fanyi

Current CRAN status: OK: 13

Package ggbreak

Current CRAN status: OK: 13

Package ggfun

Current CRAN status: NOTE: 10, OK: 3

Version: 0.1.8
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.2.0 because package code uses the pipe placeholder syntax added in R 4.2.0. File(s) using such syntax: ‘utilities.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package ggimage

Current CRAN status: NOTE: 10, OK: 3

Version: 0.3.3
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘geom_phylopic.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package ggplotify

Current CRAN status: OK: 13

Package ggtangle

Current CRAN status: NOTE: 10, OK: 3

Version: 0.0.6
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘cnet.r’ ‘graph.r’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package gson

Current CRAN status: OK: 13

Package hexSticker

Current CRAN status: NOTE: 3, OK: 10

Version: 0.4.9
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package meme

Current CRAN status: OK: 13

Package mirrorselect

Current CRAN status: OK: 13

Package plotbb

Current CRAN status: OK: 13

Package rvcheck

Current CRAN status: OK: 13

Package scatterpie

Current CRAN status: OK: 13

Package scholar

Current CRAN status: NOTE: 13

Version: 0.2.4
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Guangchuang Yu <guangchuangyu@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.2.4
Check: Rd files
Result: NOTE checkRd: (-1) get_profile.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) get_profile.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) get_profile.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) get_profile.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) get_profile.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.2.4
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: get_scholar_resp.Rd: response, GET Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Package seqmagick

Current CRAN status: NOTE: 10, OK: 3

Version: 0.1.7
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘consensus.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package shadowtext

Current CRAN status: OK: 13

Package shinyTempSignal

Current CRAN status: NOTE: 10, OK: 3

Version: 0.0.8
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘app_server.R’ ‘function.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package TDbook

Current CRAN status: NOTE: 2, OK: 11

Version: 0.0.6
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Guangchuang Yu <guangchuangyu@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package tidydr

Current CRAN status: OK: 13

Package tidytree

Current CRAN status: OK: 13

Package wget

Current CRAN status: OK: 13

Package wikiprofiler

Current CRAN status: ERROR: 4, OK: 9

Additional issues

ATLAS

Version: 0.1.5
Check: examples
Result: ERROR Running examples in ‘wikiprofiler-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: wpplot > ### Title: Input specific wikipathways ID to get an output in class of > ### wpplot. > ### Aliases: wpplot > > ### ** Examples > > if (yulab.utils::has_internet()) + wpplot('WP179') Warning in (function (con = stdin(), n = -1L, ok = TRUE, warn = TRUE, encoding = "unknown", : incomplete final line found on 'https://www.wikipathways.org/wikipathways-assets/pathways/WP179/WP179.svg' Error in rsvg::rsvg_nativeraster(f) : Failed to parse svg: XML parse error: Error domain 1 code 77 on line 1 column 294913 of data: Premature end of data in tag g line 1 Calls: <Anonymous> ... annotation_custom -> layer -> as.grob -> as.grob.wpplot -> <Anonymous> Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64

Version: 0.1.5
Check: examples
Result: ERROR Running examples in 'wikiprofiler-Ex.R' failed The error most likely occurred in: > ### Name: wpplot > ### Title: Input specific wikipathways ID to get an output in class of > ### wpplot. > ### Aliases: wpplot > > ### ** Examples > > if (yulab.utils::has_internet()) + wpplot('WP179') Warning in (function (con = stdin(), n = -1L, ok = TRUE, warn = TRUE, encoding = "unknown", : incomplete final line found on 'https://www.wikipathways.org/wikipathways-assets/pathways/WP179/WP179.svg' Error in rsvg::rsvg_nativeraster(f) : Failed to parse svg: XML parse error: Error domain 1 code 77 on line 1 column 294913 of data: Premature end of data in tag g line 1 Calls: <Anonymous> ... annotation_custom -> layer -> as.grob -> as.grob.wpplot -> <Anonymous> Execution halted Flavor: r-devel-windows-x86_64

Version: 0.1.5
Check: examples
Result: ERROR Running examples in 'wikiprofiler-Ex.R' failed The error most likely occurred in: > ### Name: wpplot > ### Title: Input specific wikipathways ID to get an output in class of > ### wpplot. > ### Aliases: wpplot > > ### ** Examples > > if (yulab.utils::has_internet()) + wpplot('WP179') Warning in (function (con = stdin(), n = -1L, ok = TRUE, warn = TRUE, encoding = "unknown", : incomplete final line found on 'https://www.wikipathways.org/wikipathways-assets/pathways/WP179/WP179.svg' Error in rsvg::rsvg_nativeraster(f) : Failed to parse svg: XML parse error: Error domain 1 code 77 on line 1 column 302186 of data: Premature end of data in tag g line 1 Calls: <Anonymous> ... annotation_custom -> layer -> as.grob -> as.grob.wpplot -> <Anonymous> Execution halted Flavor: r-oldrel-windows-x86_64

Package yulab.utils

Current CRAN status: OK: 13