CRAN Package Check Results for Maintainer Frederic Bertrand <frederic.bertrand at utt.fr>

CRAN Package Check Results for Maintainer ‘Frederic Bertrand <frederic.bertrand at utt.fr>’

Last updated on 2025-08-31 15:48:52 CEST.

Package	ERROR	NOTE	OK
bigalgebra	3		10
BioStatR			13
bootPLS			13
c060			13
Cascade			13
CascadeData			13
granova			13
mi4p			13
ModStatR		4	9
networkABC		1	12
OneTwoSamples		13
Patterns	1		12
penalizedSVM		2	11
peperr		2	11
plsdepot			13
plsdof		2	11
plspm			13
plsRbeta			13
plsRcox		2	11
plsRglm		6	7
robustfa		6	7
sageR			13
SelectBoost		2	11
survAUC			13
tester			13
turner			13

Version: 2.0.0
Check: examples
Result: ERROR Running examples in ‘bigalgebra-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: dgeqrf > ### Title: QR factorization > ### Aliases: dgeqrf > > ### ** Examples > > hilbert <- function(n) { i <- 1:n; 1 / outer(i - 1, i, "+") } > h9 <- hilbert(9); h9 [,1] [,2] [,3] [,4] [,5] [,6] [1,] 1.0000000 0.5000000 0.33333333 0.25000000 0.20000000 0.16666667 [2,] 0.5000000 0.3333333 0.25000000 0.20000000 0.16666667 0.14285714 [3,] 0.3333333 0.2500000 0.20000000 0.16666667 0.14285714 0.12500000 [4,] 0.2500000 0.2000000 0.16666667 0.14285714 0.12500000 0.11111111 [5,] 0.2000000 0.1666667 0.14285714 0.12500000 0.11111111 0.10000000 [6,] 0.1666667 0.1428571 0.12500000 0.11111111 0.10000000 0.09090909 [7,] 0.1428571 0.1250000 0.11111111 0.10000000 0.09090909 0.08333333 [8,] 0.1250000 0.1111111 0.10000000 0.09090909 0.08333333 0.07692308 [9,] 0.1111111 0.1000000 0.09090909 0.08333333 0.07692308 0.07142857 [,7] [,8] [,9] [1,] 0.14285714 0.12500000 0.11111111 [2,] 0.12500000 0.11111111 0.10000000 [3,] 0.11111111 0.10000000 0.09090909 [4,] 0.10000000 0.09090909 0.08333333 [5,] 0.09090909 0.08333333 0.07692308 [6,] 0.08333333 0.07692308 0.07142857 [7,] 0.07692308 0.07142857 0.06666667 [8,] 0.07142857 0.06666667 0.06250000 [9,] 0.06666667 0.06250000 0.05882353 > qr(h9)$rank #--> only 7 [1] 7 > qrh9 <- qr(h9, tol = 1e-10) Error: 'Rf_getCharCE' must be called on a CHARSXP, but got 'builtin' Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2.0.0
Check: examples
Result: ERROR Running examples in ‘bigalgebra-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: dgeev > ### Title: DGEEV computes eigenvalues and eigenvectors. > ### Aliases: dgeev > > ### ** Examples > > set.seed(4669) > A = matrix(rnorm(16),4) > WR= matrix(0,nrow=4,ncol=1) > WI= matrix(0,nrow=4,ncol=1) > VL = matrix(0,ncol=4,nrow=4) > eigen(A) eigen() decomposition $values [1] 0.85730911+1.690442i 0.85730911-1.690442i -0.86120947+0.000000i [4] -0.04044732+0.000000i $vectors [,1] [,2] [,3] [1,] -0.20131416-0.08051662i -0.20131416+0.08051662i -0.4396218+0i [2,] -0.73251338+0.00000000i -0.73251338+0.00000000i 0.4547709+0i [3,] -0.06644069-0.55880008i -0.06644069+0.55880008i -0.1693250+0i [4,] 0.22714677+0.21942261i 0.22714677-0.21942261i -0.7558076+0i [,4] [1,] -0.9125418+0i [2,] -0.2656930+0i [3,] 0.2527695+0i [4,] 0.1810590+0i > dgeev(A=A,WR=WR,WI=WI,VL=VL) [1] 0 > VL [,1] [,2] [,3] [,4] [1,] -0.099694024 0.1149983 -0.2126753 -0.7057922 [2,] 0.657326284 0.0000000 -0.1918649 0.3331385 [3,] 0.007357843 0.5515939 -0.3234797 0.3139870 [4,] 0.451853982 -0.1904644 -0.9018414 0.5406369 > WR [,1] [1,] 0.85730911 [2,] 0.85730911 [3,] -0.86120947 [4,] -0.04044732 > WI [,1] [1,] 1.690442 [2,] -1.690442 [3,] 0.000000 [4,] 0.000000 > > rm(A,WR,WI,VL) > > A = as.big.matrix(matrix(rnorm(16),4)) > WR= matrix(0,nrow=4,ncol=1) > WI= matrix(0,nrow=4,ncol=1) > VL = as.big.matrix(matrix(0,ncol=4,nrow=4)) > eigen(A[,]) eigen() decomposition $values [1] -0.7802559+0.6873447i -0.7802559-0.6873447i 0.6930662+0.4810716i [4] 0.6930662-0.4810716i $vectors [,1] [,2] [,3] [1,] 0.1471182+0.4334710i 0.1471182-0.4334710i -0.2986975+0.07375248i [2,] 0.2638302+0.1607608i 0.2638302-0.1607608i -0.4446219-0.18640256i [3,] -0.4094915+0.0733955i -0.4094915-0.0733955i 0.7778787+0.00000000i [4,] -0.7224532+0.0000000i -0.7224532+0.0000000i 0.2526100-0.06323534i [,4] [1,] -0.2986975-0.07375248i [2,] -0.4446219+0.18640256i [3,] 0.7778787+0.00000000i [4,] 0.2526100+0.06323534i > dgeev(A=A,WR=WR,WI=WI,VL=VL) [1] 0 > VL[,] [,1] [,2] [,3] [,4] [1,] -0.63149291 0.0000000 0.35751797 0.04531232 [2,] -0.22007417 0.1890068 -0.81587447 0.00000000 [3,] -0.33976651 0.2889619 -0.32444761 -0.26761276 [4,] -0.08779556 -0.5571465 -0.04124336 0.16091204 > WR[,] [1] -0.7802559 -0.7802559 0.6930662 0.6930662 > WI[,] [1] 0.6873447 -0.6873447 0.4810716 -0.4810716 > > rm(A,WR,WI,VL) > gc() *** caught segfault *** address (nil), cause 'unknown' Traceback: 1: gc() An irrecoverable exception occurred. R is aborting now ... Segmentation fault Flavor: r-release-linux-x86_64

Version: 2.0.0
Check: examples
Result: ERROR Running examples in 'bigalgebra-Ex.R' failed The error most likely occurred in: > ### Name: dgeev > ### Title: DGEEV computes eigenvalues and eigenvectors. > ### Aliases: dgeev > > ### ** Examples > > set.seed(4669) > A = matrix(rnorm(16),4) > WR= matrix(0,nrow=4,ncol=1) > WI= matrix(0,nrow=4,ncol=1) > VL = matrix(0,ncol=4,nrow=4) > eigen(A) eigen() decomposition $values [1] 0.85730911+1.690442i 0.85730911-1.690442i -0.86120947+0.000000i [4] -0.04044732+0.000000i $vectors [,1] [,2] [,3] [1,] -0.20131416-0.08051662i -0.20131416+0.08051662i -0.4396218+0i [2,] -0.73251338+0.00000000i -0.73251338+0.00000000i 0.4547709+0i [3,] -0.06644069-0.55880008i -0.06644069+0.55880008i -0.1693250+0i [4,] 0.22714677+0.21942261i 0.22714677-0.21942261i -0.7558076+0i [,4] [1,] -0.9125418+0i [2,] -0.2656930+0i [3,] 0.2527695+0i [4,] 0.1810590+0i > dgeev(A=A,WR=WR,WI=WI,VL=VL) [1] 0 > VL [,1] [,2] [,3] [,4] [1,] -0.099694024 0.1149983 -0.2126753 -0.7057922 [2,] 0.657326284 0.0000000 -0.1918649 0.3331385 [3,] 0.007357843 0.5515939 -0.3234797 0.3139870 [4,] 0.451853982 -0.1904644 -0.9018414 0.5406369 > WR [,1] [1,] 0.85730911 [2,] 0.85730911 [3,] -0.86120947 [4,] -0.04044732 > WI [,1] [1,] 1.690442 [2,] -1.690442 [3,] 0.000000 [4,] 0.000000 > > rm(A,WR,WI,VL) > > A = as.big.matrix(matrix(rnorm(16),4)) > WR= matrix(0,nrow=4,ncol=1) > WI= matrix(0,nrow=4,ncol=1) > VL = as.big.matrix(matrix(0,ncol=4,nrow=4)) > eigen(A[,]) eigen() decomposition $values [1] -0.7802559+0.6873447i -0.7802559-0.6873447i 0.6930662+0.4810716i [4] 0.6930662-0.4810716i $vectors [,1] [,2] [,3] [1,] 0.1471182+0.4334710i 0.1471182-0.4334710i -0.2986975+0.07375248i [2,] 0.2638302+0.1607608i 0.2638302-0.1607608i -0.4446219-0.18640256i [3,] -0.4094915+0.0733955i -0.4094915-0.0733955i 0.7778787+0.00000000i [4,] -0.7224532+0.0000000i -0.7224532+0.0000000i 0.2526100-0.06323534i [,4] [1,] -0.2986975-0.07375248i [2,] -0.4446219+0.18640256i [3,] 0.7778787+0.00000000i [4,] 0.2526100+0.06323534i > dgeev(A=A,WR=WR,WI=WI,VL=VL) [1] 0 > VL[,] [,1] [,2] [,3] [,4] [1,] -0.63149291 0.0000000 -0.35751797 -0.04531232 [2,] -0.22007417 0.1890068 0.81587447 0.00000000 [3,] -0.33976651 0.2889619 0.32444761 0.26761276 [4,] -0.08779556 -0.5571465 0.04124336 -0.16091204 > WR[,] [1] -0.7802559 -0.7802559 0.6930662 0.6930662 > WI[,] [1] 0.6873447 -0.6873447 0.4810716 -0.4810716 > > rm(A,WR,WI,VL) > gc() Error in gc() : GC encountered a node (000002015B95DC00) with an unknown SEXP type: 29 at memory.c:1840 Execution halted Flavor: r-oldrel-windows-x86_64

Package BioStatR

Current CRAN status: OK: 13

Package bootPLS

Current CRAN status: OK: 13

Package c060

Current CRAN status: OK: 13

Package Cascade

Current CRAN status: OK: 13

Package CascadeData

Current CRAN status: OK: 13

Package granova

Current CRAN status: OK: 13

Package mi4p

Current CRAN status: OK: 13

Package ModStatR

Current CRAN status: NOTE: 4, OK: 9

Version: 1.3.3
Check: for unstated dependencies in ‘demo’
Result: NOTE '::' or ':::' imports not declared from: ‘GGally’ ‘ade4’ ‘ggiraphExtra’ ‘lattice’ 'library' or 'require' calls not declared from: ‘DescTools’ ‘FactoMineR’ ‘GGally’ ‘ISLR’ ‘Kendall’ ‘MASS’ ‘MBESS’ ‘MVN’ ‘PCAmixdata’ ‘RColorBrewer’ ‘SuppDists’ ‘ade4’ ‘adegraphics’ ‘broom’ ‘car’ ‘coin’ ‘combinat’ ‘corpcor’ ‘corrplot’ ‘devtools’ ‘dplyr’ ‘factoextra’ ‘finalfit’ ‘ggcorrplot’ ‘ggdendro’ ‘ggiraphExtra’ ‘ggpubr’ ‘glmnet’ ‘hnp’ ‘lattice’ ‘leaps’ ‘mice’ ‘mvtnorm’ ‘naniar’ ‘ppcor’ ‘pspearman’ ‘pwr’ ‘questionr’ ‘rgl’ ‘rms’ ‘vcd’ ‘vegan’ ‘yarrr’ Flavor: r-patched-linux-x86_64

Version: 1.3.3
Check: installed package size
Result: NOTE installed size is 5.6Mb sub-directories of 1Mb or more: data 5.3Mb Flavor: r-oldrel-macos-arm64

Version: 1.4.0
Check: installed package size
Result: NOTE installed size is 5.6Mb sub-directories of 1Mb or more: data 5.3Mb Flavor: r-oldrel-macos-x86_64

Version: 1.4.0
Check: DESCRIPTION meta-information
Result: NOTE Packages listed in more than one of Depends, Imports, Suggests, Enhances: ‘GGally’ ‘ade4’ ‘ggiraphExtra’ ‘lattice’ A package should be listed in only one of these fields. Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package networkABC

Current CRAN status: NOTE: 1, OK: 12

Version: 0.8-1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Frederic Bertrand <frederic.bertrand@utt.fr>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavor: r-devel-linux-x86_64-debian-clang

Package OneTwoSamples

Current CRAN status: NOTE: 13

Version: 1.1-0
Check: Rd files
Result: NOTE checkRd: (-1) one_sample.Rd:40: Lost braces; missing escapes or markup? 40 | In two sided or one sided interval estimation of \code{sigma^2} of one normal sample, {side} is a parameter used to control whether to compute two sided or one sided interval estimation. When computing the one sided upper limit, input \code{side = -1}; when computing the one sided lower limit, input \code{side = 1}; when computing the two sided limits, input \code{side = 0} (default). | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package Patterns

Current CRAN status: ERROR: 1, OK: 12

Version: 1.6
Check: package dependencies
Result: ERROR Package required but not available: ‘jetset’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-release-macos-arm64

Package penalizedSVM

Current CRAN status: NOTE: 2, OK: 11

Version: 1.1.4
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Frederic Bertrand <frederic.bertrand@utt.fr>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "Natalia", family = "Becker", role = "aut"), person(given = "Wiebke", family = "Werft", role = "aut"), person(given = "Axel", family = "Benner", role = "aut"), person(given = "Frederic", family = "Bertrand", role = "cre", email = "frederic.bertrand@utt.fr")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package peperr

Current CRAN status: NOTE: 2, OK: 11

Version: 1.5
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Frederic Bertrand <frederic.bertrand@utt.fr>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "Christine", family = "Porzelius", role = "aut"), person(given = "Harald", family = "Binder", role = "aut"), person(given = "Frederic", family = "Bertrand", role = "cre", email = "frederic.bertrand@utt.fr")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package plsdepot

Current CRAN status: OK: 13

Package plsdof

Current CRAN status: NOTE: 2, OK: 11

Version: 0.3-2
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Frederic Bertrand <frederic.bertrand@utt.fr>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "Nicole", family = "Kraemer", role = "aut"), person(given = c("Mikio", "L."), family = "Braun", role = "aut"), person(given = "Frederic", family = "Bertrand", role = "cre", email = "frederic.bertrand@utt.fr")) as necessary. Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package plspm

Current CRAN status: OK: 13

Package plsRbeta

Current CRAN status: OK: 13

Package plsRcox

Current CRAN status: NOTE: 2, OK: 11

Version: 1.7.7
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Frederic Bertrand <frederic.bertrand@utt.fr>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. The Description field contains in <arXiv:1810.02962>, Bertrand, F., Bastien, Ph. and Maumy-Bertrand, Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package plsRglm

Current CRAN status: NOTE: 6, OK: 7

Version: 1.5.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Frederic Bertrand <frederic.bertrand@utt.fr>’ The Description field contains various criteria <arXiv:1810.01005>. It allows for missing data in the Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.5.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: signpred.Rd: visweb Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Version: 1.5.1
Check: for unstated dependencies in ‘demo’
Result: NOTE 'library' or 'require' calls not declared from: ‘plsRcox’ ‘plspm’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Package robustfa

Current CRAN status: NOTE: 6, OK: 7

Version: 1.1-0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: FaCov.Rd: CovControl-class, CovControlMcd-class, CovMcd, CovClassic myplotDD.Rd: CovClassic, getDistance Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Package sageR

Current CRAN status: OK: 13

Package SelectBoost

Current CRAN status: NOTE: 2, OK: 11

Version: 2.2.2
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Frederic Bertrand <frederic.bertrand@utt.fr>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package survAUC

Current CRAN status: OK: 13

Package tester

Current CRAN status: OK: 13

Package turner

Current CRAN status: OK: 13