CRAN Package Check Results for Package TmCalculator

Last updated on 2026-07-26 05:50:36 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.0.7	44.21	529.78	573.99	OK
r-devel-linux-x86_64-debian-gcc	1.0.7	30.90	375.40	406.30	OK
r-devel-linux-x86_64-fedora-clang	1.0.7	73.00	726.38	799.38	OK
r-devel-linux-x86_64-fedora-gcc	1.0.7	33.00	420.76	453.76	NOTE
r-devel-windows-x86_64	1.0.7	41.00	714.00	755.00	OK
r-patched-linux-x86_64	1.0.7	41.62	504.27	545.89	OK
r-release-linux-x86_64	1.0.7	41.64	500.62	542.26	OK
r-release-macos-arm64	1.0.7	13.00	171.00	184.00	ERROR
r-release-macos-x86_64	1.0.7	27.00	1776.00	1803.00	FAIL
r-release-windows-x86_64	1.0.7	43.00	759.00	802.00	OK
r-oldrel-macos-arm64	1.0.7	12.00	817.00	829.00	ERROR
r-oldrel-macos-x86_64	1.0.7	33.00	1215.00	1248.00	ERROR
r-oldrel-windows-x86_64	1.0.7	50.00	791.00	841.00	OK

Check Details

Version: 1.0.7
Check: for non-standard things in the check directory
Result: NOTE Found the following files/directories: ‘BSgenome.Ecoli.NCBI.ASM584v2’ ‘BSgenomeForge’ Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.0.7
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘genome_wide_tm_ecoli.Rmd’ using rmarkdown trying URL 'https://bioconductor.org/packages/3.23/bioc/bin/macosx/sonoma-arm64/contrib/4.6/BSgenomeForge_1.12.0.tgz' Content type 'application/x-gzip' length 833586 bytes (814 KB) ================================================== downloaded 814 KB trying URL 'https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/845/GCF_000005845.2_ASM584v2/GCF_000005845.2_ASM584v2_genomic.fna.gz' Content type 'application/x-gzip' length 1379902 bytes (1.3 MB) ================================================== downloaded 1.3 MB Quitting from genome_wide_tm_ecoli.Rmd:296-302 [linear-full] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR") --- Backtrace: ▆ 1. └─TmCalculator::plot_genome_track(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'genome_wide_tm_ecoli.Rmd' failed with diagnostics: Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR") --- failed re-building ‘genome_wide_tm_ecoli.Rmd’ SUMMARY: processing the following file failed: ‘genome_wide_tm_ecoli.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-arm64

Version: 1.0.7
Check: re-building of vignette outputs
Result: FAIL * DONE * Status: FAILURE * using check arguments '--no-clean-on-error ' * elapsed time (check, wall clock): 30:03 * result classification: failed check, errors:no, warnings:no, notes:no Flavor: r-release-macos-x86_64

Version: 1.0.7
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘genome_wide_tm_ecoli.Rmd’ using rmarkdown trying URL 'https://bioconductor.org/packages/3.22/bioc/bin/macosx/big-sur-arm64/contrib/4.5/BSgenomeForge_1.10.2.tgz' Content type 'application/x-compressed-tar' length 832361 bytes (812 KB) ================================================== downloaded 812 KB trying URL 'https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/845/GCF_000005845.2_ASM584v2/GCF_000005845.2_ASM584v2_genomic.fna.gz' Content type 'application/x-gzip' length 1379902 bytes (1.3 MB) ================================================== downloaded 1.3 MB 2026-07-26 13:09:31.511 R[18516:179080] XType: Using static font registry. Quitting from genome_wide_tm_ecoli.Rmd:296-302 [linear-full] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR") --- Backtrace: ▆ 1. └─TmCalculator::plot_genome_track(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'genome_wide_tm_ecoli.Rmd' failed with diagnostics: Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR") --- failed re-building ‘genome_wide_tm_ecoli.Rmd’ SUMMARY: processing the following file failed: ‘genome_wide_tm_ecoli.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-macos-arm64

Version: 1.0.7
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘genome_wide_tm_ecoli.Rmd’ using rmarkdown trying URL 'https://bioconductor.org/packages/3.21/bioc/bin/macosx/big-sur-x86_64/contrib/4.5/BSgenomeForge_1.8.1.tgz' Content type 'application/x-compressed-tar' length 827147 bytes (807 KB) ================================================== downloaded 807 KB trying URL 'https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/845/GCF_000005845.2_ASM584v2/GCF_000005845.2_ASM584v2_genomic.fna.gz' Content type 'application/x-gzip' length 1379902 bytes (1.3 MB) ================================================== downloaded 1.3 MB Quitting from genome_wide_tm_ecoli.Rmd:296-302 [linear-full] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR") --- Backtrace: ▆ 1. └─TmCalculator::plot_genome_track(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'genome_wide_tm_ecoli.Rmd' failed with diagnostics: Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR") --- failed re-building ‘genome_wide_tm_ecoli.Rmd’ SUMMARY: processing the following file failed: ‘genome_wide_tm_ecoli.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-macos-x86_64