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CRAN: Package wikiprofiler

wikiprofiler: Data Integration and Visualization on 'WikiPathways' Graphics

Retrieves pathway graphics from 'WikiPathways' and maps user-supplied quantitative data, such as gene expression values, onto pathway nodes. Provides a pipe-friendly grammar for building pathway visualizations with layered fills, text highlighting, condition-wise comparisons, data preparation helpers, and batch rendering utilities.

Version: 0.1.7
Imports: ggplot2, ggplotify, grDevices, grid, gson, methods, rsvg, yulab.utils (≥ 0.1.7)
Suggests: clusterProfiler, DOSE, knitr, org.Hs.eg.db, quarto, rmarkdown
Published: 2026-08-25
DOI: 10.32614/CRAN.package.wikiprofiler
Author: Guangchuang Yu ORCID iD [aut, cre, cph], Yihao Chen [aut]
Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>
BugReports: https://github.com/YuLab-SMU/wikiprofiler/issues
License: Artistic-2.0
URL: https://yulab-smu.top/contribution-knowledge-mining/
NeedsCompilation: no
Materials: README, NEWS
CRAN checks: wikiprofiler results

Documentation:

Reference manual: wikiprofiler.html , wikiprofiler.pdf
Vignettes: Visualizing pathway-level data with wikiprofiler (source, R code)

Downloads:

Package source: wikiprofiler_0.1.7.tar.gz
Windows binaries: r-devel: wikiprofiler_0.1.7.zip, r-release: wikiprofiler_0.1.7.zip, r-oldrel: wikiprofiler_0.1.7.zip
macOS binaries: r-release (arm64): wikiprofiler_0.1.7.tgz, r-oldrel (arm64): wikiprofiler_0.1.7.tgz, r-release (x86_64): wikiprofiler_0.1.7.tgz, r-oldrel (x86_64): wikiprofiler_0.1.7.tgz
Old sources: wikiprofiler archive

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