veg_layers with information about
vegetation layers.new_layer() to add layer information
tables in vegtable objects.count_taxa() also inserts results into slot
relations.'level' and 'include_lower'
in function crosstable() They enable selection and/or
merging of taxon ranks in cross tables.cross2db() implemented in two methods, a
data.frame-method and a matrix-method.keep_synonyms in function
used_concepts(), which can be used to skp synonyms in the
output object.crosstable() was not applying properly the
argument use_nas.veg_diversity() and functions calculating
diversity indices: shannon(), evenness(),
dominance(), simpson(), and
richness().new_relation() inserting new relations
into vegtable objects. This function is internally called
by veg_relation().df2coverconvert() coercing data frames and
lists into coverconvert objects.data.frame.taxlistin_header defined in several functions is set
as in_header = TRUE.match_names(),
merge_taxa(). These functions are now exclusive for objects
of class taxlist.names() for vegtable objects will
retrieve a list with all names from the respective slots.as() and
as<-.trait_proportion() and
trait_stats() are also adding results to the slot
relations.taxa2samples() when
setting an argument in the parameter 'merge_to', which was
not properly working in all cases.used_concepts() to extract taxon concepts
that are occurring in the plot observations.cover_trans() in replacement of
transform()syntax in vegtable objects.show() and print() methods for objects
vegtable, coverconvert, and
shaker.make_cocktail(), names of syntaxa are
allowed to start with numerical values.write_juice() includes a messages when working
and with some metadata for cross-check when importing in Juice.taxa2samples() setting the
levels to be included in output object (include_levels) and
to remove taxa without levels (na.rm).subset() extended to content in slot
relations.vegtable2kml() was deprecated to resolve
dependencies on GIS packages associated to package
plotKML.summary() also providing number of plots with
records.transform() deprecated and replaced by
cover_trans().write_juice() in Linux are now
readable in Windows.clean() objects with no entries resulted in invalid
objects.count_taxa() for aggregating ranks with missing
records for lower taxa.roxygen2.preserve_ids in function
add_releves().count_taxa() adapted to the current package
taxlist.relation2header().trait_stats() and
trait_proportion().add_traits in function
taxa2samples().count_taxa(), formula-method, indicates the
counted rank in the output.write_juice() for general
cases.as_matrix in function
crosstable() alternating matrix or
data.frame as output.suffix and in_header for the
function count_taxa().taxa2samples() was not properly working when
taxlist had taxon concepts without level information.aspect_conv.taxa2samples() for changing record names
by their respective accepted names.count_taxa() implemented for
vegtable objects.Kenya_veg Including hierarchical
ranks.cross2db was not working properly for tables
with only one columnnumeric values in function
transform().match_names() for vegtable
objects.layers2samples().add_releves(), adding releves from data
frames into vegtable objects.LayerID in prototype for
vegtable objects.NA values are allowed for layers in slot
samples.layers will be deleted by
function clean().match_header included in function
veg_relation().NA values in
TaxonUsageID at slot samples.aggregate.layers added to vegtable
objects.subset working similarly to
taxlist::subset.clean does not modify slot
species.crosstable access also to taxon traits.use_nas for function
crosstable.
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