vcfppR 0.8.2

• extend subset S3 function for vcftable
• vcfcomp: stats=‘gtgq’
• fix vcfplot
• more unit tests and examples

vcfppR 0.8.1

• remove unused code in vcfpp.h
• vcfcomp: rename the col name “concordance” as “accuracy”

vcfppR 0.8.0

• copy static libs into libs folder

vcfppR 0.7.6

• fix CRAN notes

vcfppR 0.7.5

• fix issue #14 to handle libdeflate dependency on linux

vcfppR 0.7.4

• fix issue #13 to speedup setRegion

vcfppR 0.7.3

• enable libdeflate on linux

vcfppR 0.7.2

• make htslib available for including and linking by other packages

vcfppR 0.7.0

• fix parsing BCF when subsetting sample ids and the genomic region at the same time
• fix vcfcomp with stats="nrc" when the input vectors have different length
• use the latest version of htslib v1.21
• reduce the size of installation

vcfppR 0.6.0

• upgrade vcfpp.h to v0.6.0
• new API vcfreader$setRegion
• new API vcfreader$getStatus

vcfppR 0.5.0

• upgrade vcfpp.h to v0.5.1
• add bcfreader$updateSamples() function
• vcfcomp: can take vcftable object as input
• vcfcomp: defaults changed setid=FALSE
• bug fix

vcfppR 0.4.6

• add vcfplot function
• fix bug in vcftable when FORMAT has unaligned list
• add vignette on vcfcomp

vcfppR 0.4.5

• add vcfcomp function
• fix memory leaks and pass ASAN check

vcfppR 0.4.0

• add setid option for vcftable
• patches for upcoming Rtools on windows

vcfppR 0.3.8

• fix issues on M1 Mac

vcfppR 0.3.7

• add vcfreader@rmFormatTag()
• add vcfreader@samples()
• vcftable supports vartype = ‘sv’

vcfppR 0.3.6

• add vcfreader::line
• remove vcfreader::setVariant
• bug fix setFormatStr
• more units tests

vcfppR 0.3.5

• add vcfreader and vcfwriter

vcfppR 0.3.4

• support filters by variant ID

vcfppR 0.3.3

• use API of vcfpp.h v0.3.1
• set missing vaules in FORMAT to NA
• support filters by QUAL, FILTER and INFO

vcfppR 0.3.0

• First release using vcfpp.h v0.3.0
• add vcftable function
• add vcfsummary function
• add vcfpopgen function