qpcstats() function computes a Quantitative
Predictive Check (QPC) score for continuous VPCs, including a composite
qpc_score (lower is better) plus component penalties for
coverage, MAE, drift, sharpness, and the Winkler interval score. Works
with binless() and binning(), with
stratification, prediction correction, and censoring. New vignette
tidyvpc_qpc documents usage #66.simulated() gains xsim and repl
arguments, stratify() gains a data.sim
argument, and binning()/binless() propagate
observed-data bins and strata to the simulated data when sim is not a
replicate of obs #63.plot.tidyvpcobj() gains censoring.color
and censoring.fill arguments to customize the colors used
in BLQ/ALQ percentage plots #69.tidyvpc_RsNLME vignette is now shipped as a
precompiled PDF (it was previously only available as source)._R_CHECK_DEPENDS_ONLY_=true in R CMD check. As a result,
the cluster dependency has been moved from Suggests to Imports.plot.tidyvpcobj. For VPC with censoring(),
users can supply arguments censoring.type (options are
'none', 'blq', 'alq', or
'both', defaults to ‘none’) and
censoring.output (options are 'grid' or
'list', defaults to 'grid').#21linewidth instead of size for lines#39.simulated.tidyvpcobj() detects if the number of
simulated rows is not an integer multiple of the number of observed rows
and adds the new xsim argument to test that x values match
between replicated simulations. It will suggest that MDV filtering may
not have occurred if either of these fails #35.predcorrect()
transformation #31.binning.tidyvpcobj() either before or
after usage of predcorrect.tidyvpcobj(), and automatically
performing LOESS pcVPC when binless.tidyvpcobj() is used.
As a result, the loess.ypc argument is no longer required#43.binless.tidyvpcobj function is now compatible with
usage of censoring.tidyvpcobj with ALQ data, in addition to
BLQ data.#49nlmixr2 was added #27headtails, maximum, and
box binning methods #23predcorrect() may now occur either before or
after call to binless(loess.ypc=TRUE)plot() function now include:
point.sizepoint.strokepoint.shapepoint.alpharibbon.alphafacet_wrap() usage for one-side stratification formulaplot() function to include plotting methods for
categorical VPCquantregbinless() vpc functionality to existing code in vpcstats
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