tidyCDISC 0.2.2

General

• Add ADaM validation functions
• Allow more input file types: csv, parquet, txt, xls, xlsx
• Add Ryan Harrison as author

Population Explorer - KM plots

• Refactor from plotly to ggsurvfit
• Add estimated median table
• Add estimate survival probabilities table
• Add time-axis ticks configuration
• Enable multiple groups
• Add Cox PH Hazard Ratios table

tidyCDISC 0.2.1 (CRAN Release)

General

• Fixed bug accessing files in app/www/ (#166)
• Improved documentation
  • Added vignette announcing release of v0.2.1
  • Added highly visible links to Blog, YouTube, and NEWS file

Table Generator

• Made the html output in the app look slightly more “CSR-like” using minor formatting tricks (#181)
• Arranged visits in chronological order for dropdown list found in Stat blocks (#154)
• Fixed bug where wrong options were being passed on some lab tables (#169)
• Fixed bug where draggable blocks were not working without inclusion of datasets with ATPT (#173)

Population Explorer

• Fixed bug where selected filters were not being applied when ‘Apply Filters’ was toggled on (#175)
• Fixed bug where plots’ visual appeal was destroyed when faceting variable labels were too long (#200)
• Fixed bug where scatter plot wouldn’t display by categorical variable with NA values (#192)
• Allowed for one-element lists in heatmap axis dropdowns (#214)

Individual Explorer

• Updated the look of the time visualization (#194)
  • Moved the event description to a tooltip instead of a label
  • Incorporated end dates (where applicable) to display ranges
  • Removed the auto-zoom when multiple groups were selected

tidyCDISC 0.2.0 (CRAN Release)

• Added RTF export option for download from the Table Generator.
• Cleaned up JS to ‘standard analyses’ drop down.
• Created “ALL” as dropdown option for ‘standard analysis’ Table 41 instead of auto populating all available weeks in the drop zone.
• added protocol / study id in prominent location on each tab
• designed ATPT variable integration in the Table Generator (when present in data)
• added OS Health & riskmetric badges to the README
• engineered more user-friendly function to create the table generator output from the block data
• ensured Table Generator output automatically updates the table name when a ‘standard analysis’ is selected
• Fixed some Population Explorer filtering issues
• Added an app.R file so that shiny app can be ran directly from shiny::runGitHub() or runUrl()

tidyCDISC 0.1.1

• automated a footnote with Source and Run Date in table generation
• allowed custom user-defined footnotes
• allowed the selection of ‘All’ when a time/visit-based statistic is chosen in the table generator
• cleaned up downloadable R Script to replicate table generator output
• fixed bug where data_from was erroneously listed as a grouping option in the population explorer

tidyCDISC 0.1.0 (CRAN Release)

• cleaning up devtools::check() & preparing for CRAN release.
• unfortunately, had to revert back to importing tippy 0.1.0 since it is the latest available version on CRAN and CRAN pkgs cannot depend on package versions under development.
• created a new toggle on the Data tab that allows users to select which CDISC pilot study data sources they wish to use in the app.
• Minor bug improvements

tidyCDISC 0.0.4

• cleaning up devtools::check() & preparing for CRAN release.

tidyCDISC 0.0.3

• For tippy package, added lower bound on to version 1.0.0 since it includes more user friendly options.

tidyCDISC 0.0.2

This release (PR #65) performs a lot of functions, testing on many non-pilot ADSL files to ensure app’s robustness beyond just the CDISC pilot data:

• closes #64: Agg class objects lost “droppability” when only ADSL uploaded
• gets rid of annoying font awesome message about verifying an icon exists
• updates gt code that was deprecated
• Made sure ‘PARAM’ exists in the data when trying to label a block
• got rid of unnecessary argument in col_for_list() and col_for_list_expr()
• added some code that helped the FREQ block produce the correct results when ran locally (via a reproducibility script)
• a little code clean up for readability

tidyCDISC 0.0.1

This release adds meat to the previous skeleton version of tidyCDISC. The initial development release was intended to be a “bare bones” platform that could serve as a foundation to build a great clinical data exploratory tool. Version 0.0.1 enriches the user experience by adding useful & commonly needed features for analysis. For more on this release, see the announcement on our blog.

• Major Features added, by tab:
  • Table Generator
    • New “STAT Blocks”, such as Y FREQ, MAX FREQ, NON-MISSING, and a pair of NESTED FREQ blocks
    • Interact with ADAE
    • 17 new ‘standard analysis’ tables in the ADAE and ADLB space.
    • An R Script download-er to reproduce analysis performed in the app
  • Population Explorer
    • New Chart types
      • line plot - means over time
      • Heat map - endpoint correlations
      • Kaplan Meier Curve (when TTE class data uploaded)
• Upgraded pkgdown site documentation to be more robust and hassle-free for developers
• Depends on updated version of IDEAFilter (>= 0.1.0.9000)
• Squashed bugs and other minor improvements

tidyCDISC 0.0.0.9000

• Added a NEWS.md file to track changes to the package.