taxonomizr: Functions to Work with NCBI Accessions and Taxonomy

Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to download NCBI data dumps and create a local database for fast and local taxonomic assignment.

Version:	0.11.1
Depends:	R (≥ 3.0.0)
Imports:	RSQLite, R.utils, data.table, curl (≥ 5.0.0)
Suggests:	testthat, knitr, rmarkdown
Published:	2025-03-13
DOI:	10.32614/CRAN.package.taxonomizr
Author:	Scott Sherrill-Mix [aut, cre]
Maintainer:	Scott Sherrill-Mix <ssm at msu.edu>
BugReports:	https://github.com/sherrillmix/taxonomizr/issues
License:	GPL-2 | GPL-3 | file LICENSE [expanded from: GPL (≥ 2) | file LICENSE]
URL:	https://github.com/sherrillmix/taxonomizr/
NeedsCompilation:	yes
Materials:	README
CRAN checks:	taxonomizr results

Documentation:

Reference manual:	taxonomizr.html , taxonomizr.pdf
Vignettes:	taxonomizr usage (source, R code)

Downloads:

Package source:	taxonomizr_0.11.1.tar.gz
Windows binaries:	r-devel: taxonomizr_0.11.1.zip, r-release: taxonomizr_0.11.1.zip, r-oldrel: taxonomizr_0.11.1.zip
macOS binaries:	r-release (arm64): taxonomizr_0.11.1.tgz, r-oldrel (arm64): taxonomizr_0.11.1.tgz, r-release (x86_64): taxonomizr_0.11.1.tgz, r-oldrel (x86_64): taxonomizr_0.11.1.tgz
Old sources:	taxonomizr archive

Reverse dependencies:

Reverse imports:

DBTC, MetaScope

Linking:

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