syncons: Efficient and Low-Cost Construction of Synthetic Communities
Provides functions and a Shiny application to design plate layouts for constructing synthetic communities (SynComs) from a pool of strains using 24-, 96- and 384-well microplates. The method generates all possible strain combinations in a scalable, low-cost workflow suitable for high-throughput experiments. Reference: Tian et al. (2024) <doi:10.21769/BioProtoc.2405576>.
| Version: | 0.1.1 |
| Depends: | R (≥ 4.1.0) |
| Imports: | dplyr, DT, glue, purrr, shiny, stringr, tibble, tidyr, utils |
| Published: | 2026-08-05 |
| DOI: | 10.32614/CRAN.package.syncons |
| Author: | Chun-Hui Gao 
[aut, cre] |
| Maintainer: | Chun-Hui Gao <gaospecial at gmail.com> |
| BugReports: | https://github.com/gaospecial/syncons/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/gaospecial/syncons, https://doi.org/10.21769/BioProtoc.2405576, https://bio-spring.shinyapps.io/SynComsConstructor/ |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | syncons results |
Documentation:
| Reference manual: | syncons.html , syncons.pdf |
Downloads:
| Package source: | syncons_0.1.1.tar.gz |
| Windows binaries: | r-devel: syncons_0.1.1.zip, r-release: syncons_0.1.1.zip, r-oldrel: syncons_0.1.1.zip |
| macOS binaries: | r-release (arm64): syncons_0.1.1.tgz, r-oldrel (arm64): syncons_0.1.1.tgz, r-release (x86_64): syncons_0.1.1.tgz, r-oldrel (x86_64): syncons_0.1.1.tgz |
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