Spatial transcriptomics iterative hierarchical clustering ('stIHC'), is a method for identifying spatial gene co-expression modules, defined as groups of genes with shared spatial expression patterns. The method is applicable across spatial transcriptomics technologies with differing spatial resolution, and provides a framework for investigating the spatial organisation of gene expression in tissues. For further details, see Higgins C., Li J.J., Carey M. <doi:10.1002/qub2.70011>.
| Version: | 0.1.0 |
| Depends: | R (≥ 4.0.0) |
| Imports: | fdaPDE, stats, cluster, mclust |
| Suggests: | testthat (≥ 3.0.0), knitr, rmarkdown, covr |
| Published: | 2026-01-12 |
| DOI: | 10.32614/CRAN.package.stIHC |
| Author: | Catherine Higgins [aut, cre], Jingyi Jessica Li [aut], Michelle Carey [aut] |
| Maintainer: | Catherine Higgins <catherine.higgins at ucd.ie> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| Citation: | stIHC citation info |
| CRAN checks: | stIHC results |
| Reference manual: | stIHC.html , stIHC.pdf |
| Vignettes: |
stIHC-introduction (source, R code) |
| Package source: | stIHC_0.1.0.tar.gz |
| Windows binaries: | r-devel: stIHC_0.1.0.zip, r-release: stIHC_0.1.0.zip, r-oldrel: stIHC_0.1.0.zip |
| macOS binaries: | r-release (arm64): stIHC_0.1.0.tgz, r-oldrel (arm64): stIHC_0.1.0.tgz, r-release (x86_64): stIHC_0.1.0.tgz, r-oldrel (x86_64): stIHC_0.1.0.tgz |
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