spider: Species Identity and Evolution in R

Analysis of species limits and DNA barcoding data. Included are functions for generating important summary statistics from DNA barcode data, assessing specimen identification efficacy, testing and optimizing divergence threshold limits, assessment of diagnostic nucleotides, and calculation of the probability of reciprocal monophyly. Additionally, a sliding window function offers opportunities to analyse information across a gene, often used for marker design in degraded DNA studies. Further information on the package has been published in Brown et al (2012) <doi:10.1111/j.1755-0998.2011.03108.x>.

Version:	1.5.1
Imports:	ape, pegas, graphics, stats, utils
Suggests:	testthat
Published:	2025-05-09
DOI:	10.32614/CRAN.package.spider
Author:	Samuel Brown [aut], Stephane Boyer [aut], Marie-Caroline Lefort [aut], Jagoba Malumbres-Olarte [aut], Cor Vink [aut], Rob Cruickshank [aut], Rupert A. Collins [aut, cre, cph]
Maintainer:	Rupert A. Collins <rupertcollins at gmail.com>
BugReports:	https://github.com/boopsboops/spider/issues
License:	MIT + file LICENSE
URL:	https://github.com/boopsboops/spider
NeedsCompilation:	no
Language:	en-GB
Citation:	spider citation info
Materials:	README, NEWS
CRAN checks:	spider results

Documentation:

Reference manual:

spider.html , spider.pdf

Downloads:

Package source:	spider_1.5.1.tar.gz
Windows binaries:	r-devel: spider_1.5.1.zip, r-release: spider_1.5.1.zip, r-oldrel: spider_1.5.1.zip
macOS binaries:	r-release (arm64): spider_1.5.1.tgz, r-oldrel (arm64): spider_1.5.1.tgz, r-release (x86_64): spider_1.5.1.tgz, r-oldrel (x86_64): spider_1.5.1.tgz
Old sources:	spider archive

Reverse dependencies:

Reverse imports:	NicheBarcoding
Reverse suggests:	delimtools, quiddich

Linking:

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