snpAIMeR: Assess the Diagnostic Power of Genomic Marker Combinations
Population genetics package for designing diagnostic panels.
Candidate markers, marker combinations, and different panel sizes are
assessed for how well they can predict the source population of known
samples. Requires a genotype file of candidate markers in STRUCTURE format.
Methods for population cross-validation are described in Jombart (2008)
<doi:10.1093/bioinformatics/btn129>.
| Version: |
2.1.1 |
| Depends: |
R (≥ 2.10) |
| Imports: |
adegenet, doParallel, dplyr, forcats, foreach, ggplot2, graphics, magrittr, parallel, readr, tidyr, utils, withr, yaml |
| Suggests: |
testthat (≥ 3.0.0) |
| Published: |
2024-02-20 |
| DOI: |
10.32614/CRAN.package.snpAIMeR |
| Author: |
Kim Vertacnik 
[cre, aut],
Oksana Vernygora
[aut],
Julian Dupuis
[aut] |
| Maintainer: |
Kim Vertacnik <kim.vertacnik at mailbox.org> |
| Contact: |
Kim Vertacnik <kim.vertacnik@mailbox.org> or Julian Dupuis
<julian.dupuis@uky.edu> |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/OksanaVe/snpAIMeR |
| NeedsCompilation: |
no |
| Materials: |
README, NEWS |
| CRAN checks: |
snpAIMeR results |
Documentation:
Downloads:
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