Predict Presence of Signal Peptides

signalHsmm predicts presence of signal peptides in eukaryotic proteins using hidden semi-Markov models. The implemented algorithm can be accessed as a web-based service http://smorfland.uni.wroc.pl/shiny/signalHsmm/.

Local instance of signalHsmm

signalHsmm can be also used locally as the R package. It can be installed from CRAN using:

install.packages("signalHsmm")

You can install the latest development version of the package directly from github:

source("https://install-github.me/michbur/signalHsmm")

After the installation, the GUI can be accessed locally:

library(signalHsmm)
gui_signalHsmm()

All signalHsmm functionalities can be also invoked in the batch mode, for example:

run_signalHsmm(benchmark_dat[1:10])