Estimating the force of infection from time varying, age varying, or constant
serocatalytic models from population based seroprevalence studies using a Bayesian framework,
including data simulation functions enabling the generation of serological surveys based on this
models. This tool also provides a flexible prior specification syntax for the force of infection
and the seroreversion rate, as well as methods to assess model convergence and comparison
criteria along with useful visualisation functions.
| Version: |
1.0.3 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
bayesplot, checkmate, config, cowplot, dplyr, ggplot2, glue, graphics, loo, expm, methods, purrr, Rcpp (≥ 0.12.0), rstan (≥ 2.18.1), rstantools (≥ 2.3.1), stats, tibble, tidyr |
| LinkingTo: |
BH (≥ 1.66.0), Rcpp (≥ 0.12.0), RcppEigen (≥ 0.3.3.3.0), RcppParallel (≥ 5.0.1), rstan (≥ 2.18.1), StanHeaders (≥
2.18.0) |
| Suggests: |
knitr, rlang, rmarkdown, scales, spelling, testthat (≥
3.0.0) |
| Published: |
2025-03-31 |
| DOI: |
10.32614/CRAN.package.serofoi |
| Author: |
Zulma M. Cucunubá 
[aut, cre],
Nicolás T. Domínguez
[aut],
Ben Lambert [aut],
Pierre Nouvellet [aut],
Geraldine Gómez
[ctb],
Jaime A. Pavlich-Mariscal
[ctb],
Hugo Gruson [ctb],
David Santiago Quevedo
[ctb],
Miguel Gámez [ctb],
Sumali Bajaj [ctb],
Everlyn Kamau [ctb],
Richard Creswell [ctb],
International Development Research Center (IDRC) [fnd],
Pontificia Universidad Javeriana [cph] |
| Maintainer: |
Zulma M. Cucunubá <zulma.cucunuba at javeriana.edu.co> |
| BugReports: |
https://github.com/epiverse-trace/serofoi/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/epiverse-trace/serofoi,
https://epiverse-trace.github.io/serofoi/ |
| NeedsCompilation: |
yes |
| SystemRequirements: |
GNU make |
| Language: |
en-GB |
| Materials: |
README, NEWS |
| CRAN checks: |
serofoi results |