Implementations for two different Bayesian models of differential co-expression. scdeco.cop() fits the bivariate Gaussian copula model from Zichen Ma, Shannon W. Davis, Yen-Yi Ho (2023) <doi:10.1111/biom.13701>, while scdeco.pg() fits the bivariate Poisson-Gamma model from Zhen Yang, Yen-Yi Ho (2022) <doi:10.1111/biom.13457>.
| Version: | 0.1.1 |
| Imports: | MASS, rjags, msm |
| Suggests: | knitr, rmarkdown |
| Published: | 2025-04-02 |
| DOI: | 10.32614/CRAN.package.scDECO |
| Author: | Anderson Bussing [aut, cre], Yen-Yi Ho [aut, ths], Zichen Ma [aut], Zhen Yang [aut] |
| Maintainer: | Anderson Bussing <abussing at email.sc.edu> |
| BugReports: | https://github.com/YenYiHo-Lab/scDECO/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/YenYiHo-Lab/scDECO |
| NeedsCompilation: | no |
| Materials: | README, NEWS |
| CRAN checks: | scDECO results |
| Reference manual: | scDECO.html , scDECO.pdf |
| Vignettes: |
scDECO-Copula (source, R code) scDECO-Poisson-Gamma (source, R code) |
| Package source: | scDECO_0.1.1.tar.gz |
| Windows binaries: | r-devel: scDECO_0.1.1.zip, r-release: scDECO_0.1.1.zip, r-oldrel: scDECO_0.1.1.zip |
| macOS binaries: | r-release (arm64): scDECO_0.1.1.tgz, r-oldrel (arm64): scDECO_0.1.1.tgz, r-release (x86_64): scDECO_0.1.1.tgz, r-oldrel (x86_64): scDECO_0.1.1.tgz |
| Old sources: | scDECO archive |
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