Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using 'R'. 'scCustomize' aims to provide 1) Customized visualizations for aid in ease of use and to create more aesthetic and functional visuals. 2) Improve speed/reproducibility of common tasks/pieces of code in scRNA-seq analysis with a single or group of functions. For citation please use: Marsh SE (2021) "Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing" <doi:10.5281/zenodo.5706430> RRID:SCR_024675.
| Version: |
3.2.4 |
| Depends: |
R (≥ 4.0.0), Seurat (≥ 4.3.0.1) |
| Imports: |
circlize, cli (≥ 3.2.0), cowplot, data.table, dplyr, forcats, ggbeeswarm, ggplot2, ggprism, ggrastr, ggrepel, glue, grDevices, grid, janitor, lifecycle, magrittr, Matrix (≥
1.5.0), mcprogress, methods, paletteer, patchwork, pbapply, purrr, rlang (≥ 1.1.3), scales, scattermore (≥ 1.2), SeuratObject (≥ 5.0.0), stats, stringi, stringr, tibble, tidyr |
| Suggests: |
BiocFileCache, ComplexHeatmap, dittoSeq, DropletUtils, ggpubr, hdf5r, knitr, Nebulosa, remotes, reticulate, rliger, rmarkdown, scuttle, tidyselect, qs, viridis |
| Published: |
2025-12-11 |
| DOI: |
10.32614/CRAN.package.scCustomize |
| Author: |
Samuel Marsh 
[aut, cre],
Ming Tang [ctb],
Velina Kozareva [ctb],
Lucas Graybuck [ctb],
Zoe Clarke [ctb] |
| Maintainer: |
Samuel Marsh <sccustomize at gmail.com> |
| BugReports: |
https://github.com/samuel-marsh/scCustomize/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://github.com/samuel-marsh/scCustomize,
https://samuel-marsh.github.io/scCustomize/,
https://doi.org/10.5281/zenodo.5706431 |
| NeedsCompilation: |
no |
| Materials: |
README, NEWS |
| CRAN checks: |
scCustomize results |