rtemis.a3: Amino Acid Annotation (A3) Format
Implements the Amino Acid Annotation (A3) format using 'S7' classes.
The A3 format is a structured schema for annotating amino acid sequences with site, region,
post-translational modification (PTM), processing event, and variant information.
Provides functions to create, read, and write A3 objects, and to import annotations from
'UniProt', 'AlphaFold', 'PDBe', 'ClinVar', and 'Ensembl'.
| Version: |
0.5.3 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
cli, data.table, rtemis.core, S7, utils |
| Suggests: |
biomaRt, httr, jsonlite, seqinr, testthat (≥ 3.0.0) |
| Published: |
2026-04-28 |
| DOI: |
10.32614/CRAN.package.rtemis.a3 |
| Author: |
E.D. Gennatas 
[aut, cre, cph] |
| Maintainer: |
E.D. Gennatas <gennatas at gmail.com> |
| BugReports: |
https://github.com/rtemis-org/a3/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://a3.rtemis.org |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
rtemis.a3 results |
Documentation:
Downloads:
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