rnaCrosslinkOO: Analysis of RNA Crosslinking Data
Analysis of RNA crosslinking data for RNA structure prediction. The package is suitable for the analysis of RNA structure cross-linking data and chemical probing data.
| Version: | 0.1.4 |
| Depends: | seqinr, GenomicRanges, stats |
| Imports: | ggplot2, reshape2, MASS, mixtools, utils, S4Vectors, patchwork, doParallel, igraph, R4RNA, RColorBrewer, IRanges, foreach, grDevices, heatmap3, TopDom, tidyverse, RRNA, ggrepel, methods, parallel, ClassDiscovery |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2024-07-10 |
| DOI: | 10.32614/CRAN.package.rnaCrosslinkOO |
| Author: | Jonathan Price 
[aut, cre],
Andrew Lim [ctb] |
| Maintainer: | Jonathan Price <jlp76 at cam.ac.uk> |
| BugReports: | https://github.com/JLP-BioInf/rnaCrosslinkOO/issues |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Citation: | rnaCrosslinkOO citation info |
| Materials: | README |
| CRAN checks: | rnaCrosslinkOO results |
Documentation:
| Reference manual: | rnaCrosslinkOO.html , rnaCrosslinkOO.pdf |
| Vignettes: |
rnaCrosslinksOO (source, R code) |
Downloads:
| Package source: | rnaCrosslinkOO_0.1.4.tar.gz |
| Windows binaries: | r-devel: rnaCrosslinkOO_0.1.4.zip, r-release: rnaCrosslinkOO_0.1.4.zip, r-oldrel: rnaCrosslinkOO_0.1.4.zip |
| macOS binaries: | r-release (arm64): rnaCrosslinkOO_0.1.4.tgz, r-oldrel (arm64): rnaCrosslinkOO_0.1.4.tgz, r-release (x86_64): rnaCrosslinkOO_0.1.4.tgz, r-oldrel (x86_64): rnaCrosslinkOO_0.1.4.tgz |
| Old sources: | rnaCrosslinkOO archive |
Linking:
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