ribiosPlot 1.3.0

• Initial CRAN submission
• Package prepared for CRAN submission with comprehensive documentation
• Depends on ribiosUtils (on CRAN)
• Optional Vennerable integration for users who install it separately

ribiosPlot 1.1.30 (2015-08-04)

• Add royalredgrayblue and royalbluegrayred color palettes
• plotPCA: xlim/ylim parameters auto-adjust for text labels
• Add function getLims to get xlim/ylim values from vectors

ribiosPlot 1.1.29 (2015-03-13)

• compactPar more flexible to accept and pass parameters to par

ribiosPlot 1.1.28 (2015-02-03)

• Fix bug in heat function: return (n)

ribiosPlot 1.1.26 (2015-01-06)

• Add compactTrellis() and setCompactTrellis() for compact publication figures
• Add function p2asterisk to map p values to asterisk symbols
• Use roxygen2 for documentation

ribiosPlot 1.1.25 (2014-07-30)

• Add function fcbrewer for factor-matching colors
• Improved manual pages
• Rename sqlayout to squareLayout
• Rename compPar to compactPar

ribiosPlot 1.1.24 (2014-07-01)

• biosHeatmap: cex main size better guessed

ribiosPlot 1.1.23 (2014-04-28)

• Add intRange and squareLayout
• pdf2png works on UDIS machine

ribiosPlot 1.1.22 (2014-04-22)

• Add histMat to visualize matrices with histograms
• Add plotPCA

ribiosPlot 1.1.20 (2014-01-28)

• Add qHist and xclipHist histogram functions

ribiosPlot 1.1.19 (2014-01-23)

• Add ribiosUtils to dependency list

ribiosPlot 1.1.18 (2014-01-22)

• Add pdf2png to convert PDF to PNG

ribiosPlot 1.1.17 (2013-08-19)

• Add cyanblackyellow and yellowblackyan color combinations
• Add jitter.xyplot

ribiosPlot 1.1.16 (2013-07-22)

• brewer.pal.factor auto-adjusts color palette size
• PCA plotting functions refactored

ribiosPlot 1.1.15 (2013-02-22)

• Update boxplot.Rscript with improved features

ribiosPlot 1.1.14 (2012-10-20)

• Add idev and ipdf functions for plotting in Rscripts
• Add blackyellowred and blackgoldred color panels

ribiosPlot 1.1.13 (2012-09-11)

• exprs-boxplot.Rscript: accepts tab-delimited and gct files

ribiosPlot 1.1.12 (2012-09-10)

• exprs-boxplot.Rscript works with GCT files

ribiosPlot 1.1.11 (2012-08-22)

• Bug fix: boundNorm works with NAs

ribiosPlot 1.1.10 (2012-06-07)

• Fix typos in brewer.pal.factor and brewer.pal.factorLevels

ribiosPlot 1.1.9 (2012-06-06)

• exprs-boxplot.Rscript: handle user-specified ylim values

ribiosPlot 1.1.8 (2012-05-23)

• Distance function changed from dist to robustDist
• Add documentation for color functions
• Substantially updated biosHeatmap documentation

ribiosPlot 1.1.7 (2012-04-30)

• coverage-plot.Rscript feature file improvements

ribiosPlot 1.1.6 (2012-04-15)

• Add exprs-boxplot.Rscript for command line boxplots

ribiosPlot 1.1.5 (2012-04-02)

• coverage-plot.Rscript supports sequence annotation

ribiosPlot 1.1.4 (2012-03-19)

• Add -featurefile option to coverage-plot.Rscript
• Fix partial matching bug in biosHeatmap

ribiosPlot 1.1.3 (2012-03-09)

• Add coverage-plot.Rscript

ribiosPlot 1.1.2 (2012-02-14)

• biosHeatmap.Rscript uses Ward as default clustering method

ribiosPlot 1.1.1 (2011-12-08)

• geneset_xyplot.Rscript improvements

ribiosPlot 1.1.0 (2011-12-02)

• Add whiteblueblackheat to three-color palettes

ribiosPlot 1.0.9 (2011-11-23)

• Add whiteblack and blackwhite to two-color palettes

ribiosPlot 1.0.8 (2011-11-22)

• Add guessWH function for auto width/height ratio of heatmaps
• Margins automatically determined based on xlab/ylab

ribiosPlot 1.0.7 (2011-11-17)

• biosHeatmap.Rscript: lwids and lheis options obsolete

ribiosPlot 1.0.6 (2011-11-16)

• Data import taken over by ribiosIO::read_exprs_matrix
• Long titles wrapped in biosHeatmap

ribiosPlot 1.0.5 (2011-11-15)

• Add Rscript subdirectory for plotting scripts

ribiosPlot 1.0.4 (2011-11-10)

• Export colorpanel function

ribiosPlot 1.0.3 (2011-10-10)

• Add zlim option to biosHeatmap

ribiosPlot 1.0.2 (2011-10-05)

• Add turyeb color palette

ribiosPlot 1.0.1 (2011-10-04)

• Margins automatically guessed
• Fine tuning of heatmap key plot parameters

ribiosPlot 1.0.0 (2011-09-20)

• Initial release: refactor visualization functions from ribios package