initial_inds argument for run_farm_sim
to continue a simulation from the final individuals of a previous run.
initial_inds can be a matrix or data framerun_farm_sim now returns a list of three elements; the
third element is a matrix of all individuals and their traits in the
final time step, with column names attached, which can be passed
directly to initial_inds in a new run_farm_sim
callinitial_inds,
generation time and individual IDs continue from the previous simulation
instead of resetting, so individuals remain uniquely identifiable across
chained runsmine_gmatrix now brackets all random number draws with
GetRNGstate / PutRNGstate, fixing a hang and
degenerate random numbers when mine_gmatrix was the first
random number use in a fresh R sessionrename_csv now renames output files directly instead of
reading and re-writing them, fixing intermittent corruption of large
individual output filesmine_gmatrix now returns the lowest-stress network
found during the evolutionary search instead of a random tournament
winnermine_gmatrix evolutionary
search is now correctly applied; previously every network element was
mutated every generationindividuals_colnames examplerotation_type is not a custom matrix, so custom crop and
pesticide rotation matrices work as intendedpesticide_threshold sets density threshold
for pesticidepesticide_threshold_delay delays pesticide
thresholdfood_consume or
pesticide_consume
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