Fixed an issue where .renvignore files were not read
when the project root was the filesystem root /.
(#2203)
Fixed an issue where renv would incorrectly warn
about the version of renv being used on project load.
(#2207)
The renv version mismatch warning is now suppressed during
bootstrap when RENV_CONFIG_STARTUP_QUIET=TRUE or
RENV_CONFIG_SYNCHRONIZED_CHECK=FALSE is set.
(#2214)
Fixed an issue where RENV_CONFIG_REPOS_OVERRIDE with
multiple named repositories (e.g., NAME1=URL1;NAME2=URL2)
was not properly decoded by the configuration system, causing functions
like renv::install() and renv::restore() to
not use the specified repositories. (#2209)
A new setting, snapshot.dev, has been added to
control whether development dependencies are included by default when
calling renv::snapshot() or renv::status().
This setting defaults to FALSE. (#2190)
RENV_CONFIG_REPOS_OVERRIDE now supports multiple
named repositories using the syntax NAME1=URL1;NAME2=URL2.
Single repository URLs continue to be supported.
Fixed an issue where renv::sysreqs() could fail on
operating systems which don’t declare a VERSION_ID in
/etc/os-release. (#2197)
renv::dependencies() now detects packages used in
e.g. data(<dataset>, package = <package>).
(#2181)
Fixed an issue where cache callbacks (e.g. those run by setting
RENV_CACHE_USER and RENV_CACHE_MODE, or via
the renv.cache.callback option) were not run after
renv::hydrate(). (#2179)
renv::embed() now errs if one or more of the package
dependencies to be included within a file are not available.
(#2178)
renv gains the function renv::vulns(),
which can be used to query vulnerability information from a Posit
Package Manager instance. This information can be queried either for a
specific set of packages, or for all packages defined in a
lockfile.
renv now also supports
RENV_LOCKFILE_VERSION = 1 as an alternate way to request
the older, compact lockfiles. (#2175)
The version check in renv::status() can now be
disabled by setting
options(renv.status.check_version = FALSE).
(#2167)
Fixed an issue where the package manager URL was computed incorrectly with RHEL 10.
renv now prints the version numbers of the packages
it downloads during install and restore. (#1925)
The renv configuration option
bioconductor.init can now be used to control the default
argument passed for the bioconductor parameter in calls to
renv::init(). (#2128)
renv now supports bootstrapping itself from the
global package cache. (#1799)
renv now prefers appending, rather than prepending,
Bioconductor repositories to the current set of repositories when
installing packages. This implies that if you’re using a repository that
also provides Bioconductor packages, this repository will be preferred
as opposed to the “default” Bioconductor repositories. (#2128)
renv::restore() now ignores the
Repository field on lockfile entries when the
repos.override configuration option is set.
(#2127)
renv::restore() now transforms binary repository
URLs appropriately, for installed packages which were recorded as
installed from an alternate binary repository URL. (#2127)
Fixed an issue where renv::dependencies() could fail
for chunks which had a label which was not a length-one
character vector. (#2144)
Fixed an issue where file.rename() could fail when
unpacking a package during installation in certain Windows environments.
(#2156)
renv’s dependency discovery now supports usages of
base::use(). (#2130)
Fixed an issue where renv could fail to parse remote
references containing an @ character. (#2135)
Fixed an issue where
renv::sysreqs(distro = <...>) could fail when passed
an alternate distribution without a version specifier. (#2105)
Fixed an issue where multimode R documents containing chunk headers which did not parse to an R list could cause dependency inference to fail. (#2110)
Fixed an issue where renv could erroneously record
packages installed from Posit Package Manager snapshots as being
installed from CRAN. (#2104)
renv now only checks for archived packages during
installation when
options(renv.install.allowArchivedPackages = TRUE) is set.
This fixes an issue where renv could erroneously discover
that Rcpp 1.3 was available when using the Posit Package Manager
repository.
Fixed an issue where renv::dependencies() could fail
with an unhelpful error message if the scanned document contained a YAML
header whose contents was not a map. (#2117)
Fixed an issue where renv::hydrate() could fail to
install packages discovered in the user library during
renv::init(). (#2109)
renv::update() now only updates the packages
installed in the project library by default.
renv::update(all = TRUE) can be used to also check if
packages installed in the default library are out-of-date, and install
updated copies into the project library. (#2108)
Fixed an issue where package installation could fail on Arch Linux with the error message “don’t know how to check sysreqs on this system”. (#2107)
renv now supports profile-specific comments within
.gitignore and .renvignore files. These are
comments of the form #| <code>, where
<code> is R code which should indicate if the
.renvignore rules should apply. Typically, this should be
of the form #| profile == "extra", or
#| profile %in% c("extra", "other"). Note that only a small
subset of base R functions are available for evaluation in this context.
Note that the first section in a .renvignore implicitly
applies to all profiles – if you want to limit it to just the default
profile, you can use #| profile == "default" for the first
line. (#1662)
The environment variable RENV_PATHS_VERSION can now
be used to substitute the R version component normally used in library /
cache paths. The provided path can include placeholders like
%V for the full R version including the patch level, and
%v for the R version without the patch level. Defaults to
R-%v when unset. (#1687)
renv::install() gains the transactional
argument, for parity with renv::restore(). (#1109)
renv gains the sysreqs() function,
which can be used to query the system packages required by a set of R
packages. Functionality is currently available for Debian-based
distributions, as well as Red Hat distributions.
On Linux, renv now uses the database from https://github.com/rstudio/r-system-requirements when
determining if an R package’s required system libraries are installed,
and notifies the user which packages (if any) are missing during install
/ restore.
Fixed an issue where renv could fail to retrieve
credentials registered for ‘github.com’ when querying URLs at
‘api.github.com’.
Fixed an issue where renv could stall when loading a
project and validating that the configured version of Bioconductor is
compatible with the version of R currently in use.
renv::snapshot() no longer fails to generate a new
lockfile if the project contains a lockfile which could not be read or
parsed.
Fixed an issue where lockfiles containing unicode characters were not correctly written or read with versions of R (< 4.2.0) on Windows. (#2091)
Fixed an issue where very long lockfiles could be truncated on write. (#2089)
Fixed an issue where renv inadvertently made web
requests in tests during R CMD check.
renv now includes additional package DESCRIPTION
fields in the lockfile. This can be useful for validating the provenance
of packages recorded in the lockfile, and also for applications using
renv which would like to recompute the hash used for
package caching from the lockfile itself.
If needed, old-style lockfiles can be generated by setting the option
options(renv.lockfile.version = 1). Note that this version
of renv remains compatible both with the older (minimal)
lockfiles, as well as with the newer lockfiles in this release.
(#2057)
The renv sandbox is now unlocked on exit after a
call to renv::use(). This should alleviate issues seen
where R’s attempts to clean up the temporary directory could fail due to
inadequate permissions on the sandbox directory. (#2076)
Fixed an issue where renv::restore() did not respect
the named repository within the lockfile when installing packages from
the archives of the configured package repositories. (#2081)
Fixed an issue where renv::snapshot() could fail if
invoked within a project containing empty or invalid .ipynb
files. (#2073)
Fixed an issue where R package installation could fail if the project depended on a package whose current version available from the configured package repositories required on a newer version of R than what was currently installed, even if that package need not be updated. (#2071)
Fixed an issue where RENV_CONFIG_EXTERNAL_LIBRARIES
was incorrectly split when using Windows paths. (#2069)
Fixed an issue where renv failed to restore packages
installed from r-universe when the associated lockfile record had no
RemoteRef field. (#2068)
renv now detects dependencies from usages of
utils::citation(). (#2047)
Fixed an issue where packages installed from r-universe via an explicit URL remote could not be restored. (#2060)
Fixed an issue where the repositories provided to
renv::init() were ignored when also initializing
renv with a specific version of Bioconductor.
renv::install() gains the include
parameter, which can be useful when you’d like to install a subset of
dependencies within a project while also respecting any declared remotes
in that project’s DESCRIPTION file. (#2055)
Fixed an issue where renv could fail to check for
updates for packages installed using pak without an
explicit branch specified. (#2040)
renv::use() no longer re-installs packages which are
already installed and compatible with the requested packages.
(#2044)
Fixed an issue where renv::init() could fail when
using named remotes in a DESCRIPTION file’s Remotes: field.
(#2055)
Fixed an issue where ignore rules of the form !*.*
were not parsed and handled correctly during dependency discovery.
(#2052)
Fixed an issue where renv erroneously reported that
installed packages were cached when the cache was not writable.
(#2041).
renv now supports updating of currently-installed
packages via renv::install() when configured to use
pak. (#2037)
Fixed an issue where renv library paths were not
properly reset following a suspend / resume in RStudio Server.
(#2036)
renv::run() gains the args parameter,
which can be used to pass command-line arguments to a script.
(#2015)
renv now infers a dependency on
rmarkdown and knitr for R scripts which
include YAML front-matter. (#2023)
The performance of renv’s built-in JSON reader has
been improved. (#2021)
Fixed an issue where renv could erroneously create a
binding called ‘object’ in the global environment on startup.
(#2017)
Fixed an issue where headers were not properly passed to
available.packages() during renv bootstrap.
(#1942)
renv now assumes that Artifactory package
repositories will use a CRAN-like layout of packages for packages in the
archive. (#1996)
renv now includes compiled extensions on Linux +
macOS. These extensions are primarily used to improve the performance of
renv::dependencies() and other static analysis code.
Support for Windows may come in a future release.
Fixed an issue where renv::snapshot() could fail if
the project contained a call to module() with no arguments.
(#2007)
On Linux, renv now emits a message on load if the R
temporary directory is within a folder that has been mounted as
‘noexec’. This message can be suppressed by setting the
RENV_TEMPDIR_NOEXEC_CHECK=FALSE environment
variable.
Fixed a performance regression in
renv::dependencies(). (#1999)
Fixed an issue where renv tests could fail if the
parallel package was loaded during test execution.
renv now determines a package repository’s type
through the HTTP headers provided when accessing
src/contrib/PACKAGES. This is mainly relevant when
detecting Nexus and Artifactory repositories.
Fixed an issue where repository URLs were inappropriately transformed into binary repository URLs on Linux. (#1991)
Fixed an issue where code following
source("renv/activate.R") in the project
.Rprofile was not invoked for projects using RStudio.
(#1990)
renv now infers a dependency on the
ragg package when the ragg_png device is used
in R Markdown / Quarto documents, for documents using the code
knitr::opts_chunk$set(dev = "ragg_png"). (#1985)
renv now automatically generates a lockfile when
loading a project containing a manifest.json file (typical
for application bundles published to Posit Connect). (#1980, @toph-allen)
renv::install() now errs if an incompatible
type argument is provided.
renv::checkout() now also checks out the version of
renv available and associated with the requested snapshot
date. (#1966)
Fixed an issue where renv::hydrate() did not hydrate
packages which were also listed as dependencies within a project’s
DESCRIPTION file. (#1970)
Fixed an issue where renv::checkout() omitted some
fields from lockfile records when using
actions = c("snapshot", "restore"). (#1969)
renv gains the function
renv::retrieve(), which can be used to download packages
without installing them. This is primarily useful in CI / CD scenarios,
where you might want to download packages in a single stage before
attempting to install / restore them. (#1965)
renv now preserves Remote fields
present on packages installed from public package repositories (e.g. https://r-universe.dev/).
(#1961)
Fixed an issue where renv::load() could fail to load
an alternate project when
options(renv.config.autoloader.enabled = FALSE) was set.
(#1959)
renv now emits clickable hyperlinks for runnable
code snippets and help, for front-ends which support the
ide:run and ide:help ANSI escapes.
renv::init(bioc = "<version>") now prompts the
user in interactive sessions when requesting a version of Bioconductor
which is not compatible with the current version of R. (#1943)
renv::restore() gains the transactional
argument, which can be used to control whether renv will
allow successfully-installed packages remain in the project library even
if a package fails to install during a later step. (#1109)
renv now infers a dependency on the
xml2 package for projects using the
testthat::JunitReporter for tests. (#1936)
Fixed an issue where renv::dependencies() could emit
a warning when attempting to parse chunks using chunk options like
#| eval: c(1, 2). (#1906)
renv::install() now properly delegates the
type and rebuild arguments to pak
when options(renv.config.pak.enabled = TRUE) is set.
(#1924)
renv now infers a dependency on the
svglite package if it detects calls of the form
ggsave(filename = "path.svg"). (#1930)
renv now supports setting of GitHub authentication
credentials via any of GITHUB_TOKEN,
GITHUB_PAT, and GH_TOKEN. (#1937)
renv now also passes any custom headers available to
utils::available.packages() during bootstrap.
(#1942)
Fixed an issue where renv could fail during
installation of packages stored within repository sub-directories, if
that repository also contained a top-level DESCRIPTION file.
(#1941)
renv now normalizes lockfile entries for
Bioconductor packages installed via pak::pkg_install(), to
help prevent spurious diffs being produced via
renv::status(). (#1920)
renv::install() now respects the prompt
parameter when pak is enabled, as via
options(renv.config.pak.enabled = TRUE). (#1907)
Fixed an issue with renv’s pak
integration where renv could install the wrong version of a
GitHub package during restore if
options(renv.config.pak.enabled = TRUE) was set.
(#1883)
renv no longer interacts with the user during
autoloading, which coincides with R startup. If the IDE offers a session
init hook (RStudio does), loading is deferred until startup is complete
and interaction is possible. Otherwise, any suggested renv actions, such
as renv::restore(), are emitted as a message for the user
to act on. (#1879, #1915).
Fixed an issue where installation of packages from local sources,
as via
install("<package>", repos = NULL, type = "source"),
could fail. (#1880)
A new function, renv::lockfile_validate(), can be
used to validate your renv.lock against a default or custom
schema. (#1889)
renv’s activate script failed to
report version conflict errors when starting up. (#1874)Fixed an issue where downloads could fail with curl >= 8.7.1. (#1869)
Fixed an issue where renv::snapshot() did not
properly normalize package records generated from packages installed
using the pak package, e.g. via
pak::pkg_install("cran::<package>").
Fixed an issue where renv could incorrectly prompt
the user to record a version of renv installed from GitHub
in some cases. (#1857)
renv::load() now delegates to
base::load() when it detects that the call was likely
intended for base::load(), but renv::load()
was used instead (e.g. because base::load() was masked by
renv::load()).
renv::update() gains the lock argument,
which can be used to instruct renv to automatically update
the lockfile after the requested packages have been updated.
(#1849)
Fixed an issue where renv could fail to update the
project autoloader after calling renv::upgrade().
(#1837)
Fixed an issue where attempts to install binary packages from older PPM snapshots could fail. (#1839)
renv now uses a platform-specific prefix on Linux
for library and cache paths by default with R (>= 4.4.0). This is
equivalent to setting RENV_PATHS_PREFIX_AUTO = TRUE. If
necessary, this behavior can be disabled by setting
RENV_PATHS_PREFIX_AUTO = FALSE in an appropriate R startup
file. (#1211)
renv now only writes a .renvignore file
into the cache directory if the cache appears to be part of the current
project.
renv now reports missing system libraries as part of
its ABI checks in renv::diagnostics().
Fixed an issue where renv::install(lock = TRUE)
produced lockfiles containing records with extraneous data.
(#1828)
renv::install() gains the lock
argument. When TRUE, the project lockfile will be updated
after the requested packages have been successfully installed.
(#1811)
renv now supports the use of GitHub Enterprise
servers with the gitcreds package for authentication
credentials. (#1814)
renv::dependencies() now treats
#| eval: !expr <...> chunk options as truthy by
default, implying that such chunks are scanned for their R package
dependencies. (#1816)
renv::dependencies() now requires usages of the import package to
be namespace-qualified in order to be handled via static analysis; that
is, import::from(<pkg>) is parsed for dependencies,
but from(pkg) is not. (#1815)
renv::load() gains the profile
argument, allowing one to explicitly load a specific profile associated
with an renv project. See
vignette("profiles", package = "renv") or
https://rstudio.github.io/renv/articles/profiles.html for more
details.
renv::dependencies() no longer includes
R dependency versions declared from a
DESCRIPTION file in its output. (#1806)
Fixed an issue where renv could fail to infer
dependencies from R Markdown code chunks using engine ‘R’ (upper-case)
rather than ‘r’ (lower-case). (#1803)
Fixed an issue where renv did not report out-of-sync
packages when one or more packages used in the project were not
installed. (#1788)
Fixed an issue where renv could over-aggressively
activate P3M repositories when initializing a project. (#1782)
renv::status() now notifies the user if the version
of R recorded in the lockfile does not match the version of R currently
in use. (#1779)
Fixed an issue where packages could appear multiple times in the lockfile, if that package was installed into multiple library paths. (#1781)
Installation of historical binaries of packages is once again enabled, now using the Posit Public Package Manager (P3M) service instead of Microsoft’s (now defunct) MRAN service.
renv::init() now respects the Remotes:
field declared in a project’s DESCRIPTION file, if any.
(#1522)
renv::embed() now supports Quarto Markdown
(.qmd) files. (#1700)
renv now sets the R_INSTALL_TAR environment variable
to match the default tar executable (if any) when
installing packages. (#1724)
renv now uses --ssl-revoke-best-effort by default
when downloading files using curl on Windows.
(#1739)
Fixed an issue where renv::install() could fail to
detect incompatible recursive package dependencies. (#1671)
renv::install() now records remote information for
packages installed from CRAN-like repositories, and uses that
information when generating a lockfile and restoring those packages.
This helps ensure that packages installed within an renv project via
calls like
renv::install("<pkg>", repos = "<repos>") can
still be successfully restored in future sessions. (#1765)
renv::install() now lazily resolves project remotes.
(#1755)
renv::init() now respects Remotes declared within a
project’s DESCRIPTION file, if any.
Calling renv::activate() without explicitly
providing the profile argument now preserves the current
profile, if any. Use renv::activate(profile = "default") if
you’d like to re-activate a project using the default profile.
(#1217)
Fixed an issue where renv would try to prompt for
the installation of BiocManager when activating a project
using Bioconductor. (#1754)
Fixed an issue where directories containing a large number of
files could cause renv to fail to activate a project.
(#1733)
Expanded the set of Linux distributions detected for automatic
transformation of Posit Package Manager URLs to install binary packages.
renv now correctly detects Red Hat Enterprise Linux 9,
Rocky Linux 8 and 9, SLES 15 SP4 and SP5, Debian 11 and 12, AlmaLinux 8
and 9, and Amazon Linux 2. (#1720, #1721)
Fixed an issue where renv could warn the project
appeared to be out-of-sync when using packages installed without an
explicit source recorded. (#1683)
renv::install() gains the exclude
argument, which can be useful when installing a subset of project
dependencies.
Fixed an issue where PPM repositories were not appropriately
transformed into the correct binary repository in
renv::restore() when using pak.
renv::init() no longer prompts the user for the
intended action for projects containing a library with only renv
installed. (#1668)
Fixed an issue where non-interactive usages of
renv::init() could fail with projects containing a
DESCRIPTION file. (#1663)
Fixed an issue that could cause code within a project
.Rprofile to execute before the project had been loaded in
RStudio. (#1650)
renv::snapshot() and renv::status()
gain the dev argument. This can be used when you’d like to
capture package dependencies from the Suggests field of your
package’s DESCRIPTION file. (#1019)
renv now parses package NAMESPACE files for imported
dependencies. (#1637)
renv no longer locks the sandbox by default.
Fixed an issue where renv used the wrong library paths when attempting to activate the watchdog. This could cause a 10 second delay when activating the sandbox.
Fixed an issue where authentication headers could be duplicated
when using the libcurl download method. (#1605)
renv::use() now defaults to setting
isolate = TRUE when sandbox = TRUE.
Fixed an issue where the renv watchdog could fail to load, leading to slowness in activating the sandbox on startup. (#1617)
Fixed an issue where renv did not display warnings / errors from
renv::snapshot() when
options(renv.verbose = FALSE) was set. The display of these
messages is now controlled via the renv.caution.verbose R
option. (#1607, #1608)
renv::load() now notifies the user if the
synchronization check took an excessive amount of time due to the number
of files being scanned in the project. (#1573)
renv::init() gains the load argument,
making it possible to initialize a project without explicitly loading
it. (#1583)
renv now uses a lock when synchronizing installed packages with the cache. This should help alleviate issues that can arise when multiple R processes are installing and caching packages concurrently. (#1571)
Fixed a regression in parsing expressions within R Markdown chunk options. (#1558)
Fixed an issue that prevented renv::install() from
functioning when source-only repositories were included.
(#1578)
Fixed a logic error in reading
RENV_AUTOLOAD_ENABLED. (#1580)
renv::restore() no longer runs without prompting on
load if the library is empty. (#1543)
renv::repair() now checks for installed packages
which lack a known remote source, and updates their
DESCRIPTION files if it can infer an appropriate remote
source. This typically occurs when a package is installed from local
sources, but appears to be maintained or published on a remote
repository (e.g. GitHub). This was previously done in
renv::snapshot(), but we’ve rolled back that change as the
prompting was over-aggressive. (#1574)
renv::status() now first reports on uninstalled
packages, before reporting on used <-> installed mismatches.
(#1538)
When the RENV_STARTUP_DIAGNOSTICS environment
variable is set to TRUE, renv now displays a short
diagnostics report after a project’s autoloader has been run. This can
be useful when diagnosing why renv is slow to load in certain projects.
(#1557)
renv now ensures the sandbox is activated on load, for R processes which are launched with the renv sandbox on the library paths. (#1565)
renv::restore() no longer erroneously prompts when
determining the packages which need to be installed. (#1544)
renv::update() now ensures the prompt
parameter is properly respected during package installation.
(#1540)
renv::activate() no longer erroneously preserves the
previous library paths after restarting the session within RStudio.
(#1530)
Use correct spelling of IRkernel package (#1528).
Honor R_LIBCURL_SSL_REVOKE_BEST_EFFORT when using an
external curl.exe binary to download files.
(#1624)
New renv::checkout() installings the
latest-available packages from a repository. For example,
renv::checkout(date = "2023-02-08") will install the
packages available on 2023-02-08 from the Posit Package Manager
repository. The actions argument allows you choose whether
a lockfile is generated from the provided repositories (“snapshot”), or
whether packages are installed from the provided repositories
(“restore”).
renv::deactivate() gains a clean
argument: when TRUE it will delete all renv
files/directories, leaving the project the way it was found.
renv::init() now uses Posit Public Package Manager
by default, for new projects where the repositories have not already
been configured externally. See the options
renv.config.ppm.enabled,
renv.config.ppm.default, and
renv.config.ppm.url in ?config for more
details (#430).
renv::lockfile_create(),
renv::lockfile_read(), renv::lockfile_write()
and renv::lockfile_modify() provide a small family of
functions for interacting with renv lockfiles programmatically
(#1438).
Handling of development dependencies has been refined.
renv::snapshot() and renv::status() no longer
track development dependencies, while install() continues
to install them (#1019). Suggested packages listed in
DESCRIPTION files are declared as development dependencies
regardless of whether or not they’re a “package” project.
MRAN integration is now disabled by default, pending the upcoming shutdown of Microsoft’s MRAN service. Users who require binaries of older R packages on Windows + macOS can consider using the instance of CRAN mirrored by the Posit Public Package Manager (#1343).
Development versions of renv are now tracked using the Git SHA of the current commit, rather than a version number that’s incremented on every change (#1327). This shouldn’t have any user facing impact, but makes renv maintenance a little easier.
Fixed an issue causing “restarting interrupted promise evaluation” warnings to be displayed when querying available packages failed. (#1260)
renv::activate() uses a three option menu that
hopefully make your choices more clear (#1372).
renv::dependencies() now discovers R package
dependencies inside Jupyter notebooks (#929).
renv::dependencies() includes packages used by user
profile (~/.Rprofile) if
renv::config$user.profile() is TRUE. They are
set as development dependencies, which means that they will be installed
by install() but not recorded in the snapshot.
renv::dependencies() only extracts dependencies from
text in YAML headers that looks like valid R code (#1288).
renv::dependencies() no longer treats
box::use(module/file) as using package module
(#1377).
renv::init() now prompts the user to select a
snapshot type if the project contains a top-level DESCRIPTION file
(#1485).
renv::install(type = "source") now ensures source
repositories are used in projects using PPM. (#927)
renv::install() activates Bioconductor repositories
when installing a package from a remote (e.g. GitHub) which declares a
Bioconductor dependency (via a non-empty ‘biocViews’ field)
(#934).
renv::install() respects the project snapshot type,
if set.
renv::install() now keeps source when installing
packages from source (#522).
renv::install() now validates that binary packages
can be loaded after installation, in a manner similar to source packages
(#1275).
renv::install() now supports Bioconductor remotes of
the form bioc::<BiocVersion>/<Package>, for
installing packages from a particular version of Bioconductor. Aliases
like ‘release’ and ‘devel’ are also supported (#1195).
renv::install() now requires interactive
confirmation that you want to install packages (#587).
renv::load() gives a more informative message if a
lockfile is present but no packages are installed (#353).
renv::load() no longer attempts to query package
repositories when checking if a project is synchronized (#812).
renv::load() no longer duplicates entries on the
PATH environment variable (#1095).
renv::restore() can now use
pak::pkg_install() to install packages when
pak integration is enabled. Set
RENV_CONFIG_PAK_ENABLED = TRUE in your project’s
.Renviron if you’d like to opt-in to this behavior. Note
that this requires a nightly build of pak (>=
0.4.0-9000); see https://pak.r-lib.org/dev/reference/install.html for
more details.
renv::restore() now emits an error if called within
a project that does not contain a lockfile (#1474).
renv::restore() correctly restores packages
downloaded and installed from r-universe (#1359).
renv::snapshot() now standardises pak metadata so
CRAN packages installed via pak look the same as CRAN packages installed
with renv or install.packages() (#1239).
If renv::snapshot() finds missing packages, a new
prompt allows you to install them before continuing (#1198).
renv::snapshot() no longer requires confirmation
when writing the first snapshot, since that’s an action that can easily
be undone (by deleting renv.lock) (#1281).
renv::snapshot() reports if the R version changes,
even if no packages change (#962).
renv::snapshot(exclude = <...>) no longer
warns when attempting to exclude a package that is not installed
(#1396).
renv::status() now uses a more compact display when
packages have some inconsistent combination of being installed, used,
and recorded.
renv::status() now works more like
renv::restore() when package versions are different
(#675).
renv::update() can now update packages installed
from GitLab (#136) and BitBucket (#1194).
renv::settings$package.dependency.fields() now only
affects packages installed directly by the user, not downstream
dependencies of those packages.
renv functions give a clearer error if renv.lock has
somehow become corrupted (#1027).
Fixed an issue where
renv::install("bioc::<package>") could fail if
BiocManager was not already installed. (#1184)
Fixed an issue where package names were not included in the
output of renv::diagnostics(). (#1182)
The clarity of the message printed by renv::status()
has been improved; in particular, renv should better report the
recommended actions when a package required by the project is not
installed.
renv::snapshot() gains the exclude
argument, for explicitly excluding certain packages from the generated
lockfile.
Fixed an issue where renv was passing the wrong argument name to
installed.packages(), causing usages of renv to fail with R
(<= 3.4.0). (#1173)
renv now sets the SDKROOT environment variable on
macOS if it detects that R was built using an LLVM build of
clang on macOS.
renv::install() now parses the remotes included
within, for example, a DESCRIPTION file’s
Config/Needs/... field.
renv now checks that the index directory is writable before
attempting to use it, e.g. for the R available packages
index maintained by renv. (#1171)
renv now checks that the version of curl used for
downloads appears to be functional, and reports a warning if it does not
(for example, because a requisite system library is missing). The
version of curl used for downloads can also be configured
via the RENV_CURL_EXECUTABLE environment variable.
renv gains the configuration option install.remotes,
which can be used to control whether renv attempts to read and use the
Remotes: field included with installed packages. This can
be set to FALSE if you’d like to ignore this field;
e.g. because you know they will not be accessible. (#1133)
General performance optimizations. In particular,
renv::update(check = TRUE) should now execute much
faster.
renv now stores project settings within
renv/settings.json rather than
renv/settings.dcf. Old settings will be automatically
migrated.
The renv sandbox is now placed within the renv cache directory. (#1158)
Fixed an issue where renv::status() could
erroneously report a project was out-of-sync when using explicit
snapshots. (#1159)
Fixed an issue where renv::hydrate() would print
spurious warnings. (#1160)
renv::status() now suggests running
renv::restore() if there are no packages installed in the
project library. (#1060)
Fixed an issue where renv would fail to query r-universe repositories. (#1156)
renv no longer tries to set the SDKROOT environment
variable on macOS for R (>= 4.0.0).
Fixed an issue where installation of Bioconductor packages could
fail when BiocManager was not installed. (#1156,
#1155)
Fixed an issue where the amount of time elapsed reported by
renv::install() failed to include the time spent retrieving
packages.
The performance of renv::snapshot() has
improved.
renv now maintains an index of available packages, as retrieved
from the active package repositories, that is shared across
R sessions. This should improve renv’s performance when
querying for available packages across multiple different R
sessions.
renv::hydrate() gains the prompt
parameter. When TRUE (the default), renv will prompt for
confirmation before attempting to hydrate the active library.
Improved handling of package installation via SSH URLs with
git. (#667)
Improved handling of R version validation when using projects
with Bioconductor. If you find renv is erroneously reporting that your
version of R is incompatible with the version of Bioconductor you are
using, you can set
options(renv.bioconductor.validate = FALSE) to disable this
validation behaviour. (#1148)
Package names can now be associated with remotes in
renv::install(); for example, you can use
renv::install("igraph=igraph/rigraph") to install the
igraph package. This is mainly important when using the
renv.auth authentication tools, where the package name of a
remote needs to be declared explicitly. (#667)
Fixed an issue that could prevent renv::restore()
from functioning when attempting to install packages which had been
archived on CRAN. (#1141)
renv::install() gains the dependencies
argument, which behaves similarly to the equivalent argument in
remotes::install_*(). In particular, this can be set to
fields like Config/Needs/dev to tell renv to use custom
DESCRIPTION fields for dependency resolution in installation.
Fixed an issue where the function variant of the
renv.auth option was not resolved correctly.
(#667)
renv::install() now supports remotes with a trailing
slash – such slashes are now removed. (#1135)
Integration with the RStudio (Posit) Package Manager is now disabled by default on aarch64 Linux instances.
The RENV_CACHE_MODE environment variable can now
also be used to adjust the permissions set on downloaded package
tarballs / binaries. (#988)
Fixed an issue where fields of the form Remotes.1
could enter lockfile records for older versions of R. (#736)
Fixed the performance of renv::update() in cases
where integration with MRAN is enabled.
Fixed an issue where package installation using pak
could fail in some cases.
renv_file_find() can now scan up to the root
directory in Docker containers. (#1115)
renv no longer uses the R temporary directory on Windows for the
sandbox. The sandbox directory can be customized via the
RENV_PATHS_SANDBOX environment variable if required.
(#835)
renv now reports the elapsed time when installing packages. (#1104)
For projects using “explicit” snapshots, renv now reports if a package is required by the project, but the package is not currently installed. (#949)
Fixed an issue where renv::snapshot() could fail to
detect when no changes had been made to the lockfile.
Fixed an issue where renv could emit JSON lockfiles which could not be parsed by external JSON readers. (#1102)
renv now marks the sandbox as non-writable, which should hopefully alleviate issues where attempts to update installed packages would inadvertently install the updated package into the sandbox. (#1090)
renv::use() gains the sandbox argument,
which allows one to control whether the system library is sandboxed
after a call to renv::use(). (#1083)
The path to the Conda environment.yml file created
by renv can now be customized via the
RENV_PATHS_CONDA_EXPORT environment variable. We recommend
setting this within your project-local .Renviron file as
appropriate. (#1089)
Fixed an issue where the renv sandbox location did not respect the active renv profile. (#1088)
renv now supports installation of packages with remotes of the
form <package>=<remote>. However, the provided
package name is ignored and is instead parsed from the remote itself.
(#1064)
renv now passes along the headers produced by the
renv.download.headers option when bootstrapping itself in
the call to utils::download.file(). (#1084)
renv now reports if renv::snapshot() will change or
update the version of R recorded in the lockfile. (#1069)
renv now supports the install.packages.check.source
R option, which is used to allow R to query source repositories even if
the option options(pkgType = "binary") is set.
(#1074)
renv better handles packages containing git submodules when installed from GitHub remotes. (#1075)
renv now handles local sources within the current working directory. (#1079)
The renv sandbox is once again enabled by default. On Unix, the
sandbox is now created by default within the project’s
renv/sandbox library. On Windows, the sandbox is created
within the R session’s tempdir(). The path to the renv
sandbox can be customized via the RENV_PATHS_SANDBOX
environment variable if required.
Fixed an issue where renv::status() could report
spurious changes when comparing packages installed using
pak in some cases. (#1070)
renv::restore() now also ensures the project
activate script is updated after a successful restore. (#1066)
Fixed an issue where renv could attempt to install a package from
the repository archives even when type = "binary" was set.
(#1046)
Fixed an issue where package installation could fail when the R session is configured to use multiple repositories, some of which do not provide any information on available packages for certain binary arms of the repository. (#1045)
renv now uses jsonlite for reading lockfiles when
loaded. This should help ensure useful errors are provided for
manually-edited lockfiles which contain a JSON parsing error. If the
jsonlite package is not loaded, renv will fall back to its
own internal JSON parser. (#1027)
Fixed an issue that would cause renv to fail to source the user
~/.Rprofile if it attempted to register global calling
handlers, e.g. as prompt::set_prompt() does.
(#1036)
(Linux only) renv now resets ACLs on packages copied to the
cache, to avoid persisting default ACLs that might have been inherited
on packages installed into a local project library. If desired, this
behavior can be disabled by setting the RENV_CACHE_ACLS
environment variable to FALSE. If you need finer control
over ACLs set on packages moved into the cache, consider defining a
custom callback via the renv.cache.callback R option.
(#1025)
Fixed an issue where .gitignore inclusion rules for
sub-directories were not parsed correctly by renv for dependency
discovery. (#403)
Fixed an issue where renv could report spurious diffs within
renv::status() when comparing package records installed
from pak versus the default R package installer.
(#998)
Fixed an issue where renv::use_python() could cause
the Requirements field for packages in the lockfile to be
unintentionally dropped. (#974)
The R option renv.cache.callback can now be set, to
run a user-defined callback after a package has been copied into the
cache. This can be useful if you’d like to take some action on the
cached package’s contents after the package has been moved into the
cache.
(Unix only) The RENV_CACHE_MODE environment variable
can now be used to change the access permissions of packages copied into
the cache. When set, after a package is copied into the cache, renv will
use chmod -Rf to try and change the permissions of the
cache entry to the requested permissions.
(Unix only) The RENV_CACHE_USER environment variable
can now be used to change the ownership of folders copied into the
cache. When set, after a package is copied into the cache, renv will use
chown -Rf to try and change the ownership of that cache
entry to the requested user account.
Fixed an issue where repositories containing multiple packages in sub-directories could fail to install. (#1016)
Fixed an issue where indexing of packages in the package cellar could be slow. (#1014)
Fixed an issue where installation of packages from Bioconductor’s binary Linux package repositories could fail. (#1013)
renv::restore() now supports restoration of packages
installed from R-Forge.
(#671)
Fixed an issue where renv::init(bioconductor = TRUE)
would not update the version of Bioconductor used if a project setting
had already been set.
It is now possible to “update” an existing lockfile by using
renv::snapshot(update = TRUE). When set, any records
existing in the old lockfile, but not the new lockfile, will be
preserved. (#727)
Fixed an issue where renv could fail to parse Git remotes for users whose username contains a number. (#1004)
renv no longer infers a dependency on the “quarto” R package in
projects containing a _quarto.yml file. (#995)
Fixed an issue where renv could fail to download a package from MRAN if a compatible source package of the same version was available from the active R repositories. (#990)
renv now reports permission errors during download more clearly. (#985)
Fixed an issue where RENV_PATHS_LIBRARY_ROOT_ASIS
was not interpreted correctly. (#976)
renv::modify() gains the changes
argument, which can be used to modify a project lockfile
non-interactively.
renv::clean() now returns the project directory, as
documented. (#922)
Fixed an issue where renv could fail to parse embedded YAML chunk options in R Markdown documents. (#963)
renv now sets default placeholder names for the
repos R option, for any repository URLs which happen to be
unnamed. (#964)
Fixed an issue where renv didn’t respect the PATH
ordering when discovering Python installations via
renv_python_discover(). (#961)
Fixed an issue where renv could fail to install packages containing multibyte unicode characters in their DESCRIPTION file. (#956)
Fixed detection of Rtools 4.2 (#1002)
~/.local/share/renv. (#953)A variety of fixes for R CMD check.
renv gains an experimental function,
renv::autoload(), to be used as a helper for automatically
loading a project for R processes launched within a sub-directory of
that project. See ?renv::autoload for more
details.
renv will now print a warning message when attempting to read a lockfile containing merge conflict markers (as from e.g. a git merge). (#945)
Fixed an issue where renv::install() could install
into the wrong library path on Windows, if the R installation had a
site-wide profile that mutated the library paths. (#941)
Fixed an issue where renv::install() would fail to
find a package within the cache when using an abbreviated commit hash
for installation. (#943)
Fixed an issue where renv’s automatic snapshot was not run after
calls to renv::install() in some cases. (#939)
Fixed an issue where renv would incorrectly copy a package from the cache, if the cached version of the package and the requested version of the package had the same package version, even if they were retrieved from different sources. (#938)
The path to an renv tarball can now be set via the environment
variable RENV_BOOTSTRAP_TARBALL, to be used to help renv
bootstrap from local sources. This can either be the path to a directory
containing renv source tarballs, or the path to the tarball
itself.
Fixed an issue where the R site library would not be appropriately masked for resumed RStudio sessions. (#936)
Fixed an issue where renv inadvertently inserted extra newlines
into a DESCRIPTION file when adding Remotes
fields after install. (#914)
Fixed an issue where packages installed from a remote sub-directory would fail to install when later re-installed from the cache. (#913)
renv now recognizes YAML chunk options of the form
#| key: value when used in R Markdown documents.
(#912)
Fixed an issue where the R site library was visible in renv projects with the system library sandbox disabled.
Fixed an issue where renv could update the wrong
.gitignore in R processes launched by callr
(e.g. in devtools::install). (#910)
Fixed an issue where renv could fail to read mis-encoded DESCRIPTION files. (#908)
Fixed an issue where config$cache.symlinks() would
report NULL when unset. (#906)
The development branch for renv has moved from master to main.
renv package records in the lockfile now include a
Requirements entry, which gives a list of R packages this
package depends on in some way. This is primarily for internal use by
the pak package.
Fixed an issue where packages containing DESCRIPTION files using a latin1 encoding would not be read correctly by renv.
Fixed an issue that could cause renv::dependencies()
to fail when a malformed DESCRIPTION file was encountered.
(#892)
The path to the project-local renv folder can now be configured
via the RENV_PATHS_RENV environment variable. This can be
useful if you’d prefer to store your project’s renv resources within an
alternate location in the project. (#472)
renv now uses an external library by default for R package
projects, with the library located within
tools::R_user_dir("renv", "cache"). This directory can be
configured via the RENV_PATHS_LIBRARY_ROOT environment
variable if desired. See
vignette("packages", package = "renv") for more details.
(#384)
renv now uses the repositories as defined within the project lockfile (if any) when attempting to bootstrap itself in a project. (#820)
The renv sandbox is now disabled by default – see #614 for more details.
renv gains the function repair(), to be used to
attempt to repair the project library when links into the global package
cache appear to be broken. (#378)
Fixed an issue where the staging library used during install could fail to inherit the same directory permissions as the target library itself. (#331)
Fixed an regression which caused renv::history() to
fail. (#886)
renv gains experimental support for the pak package. Set
RENV_CONFIG_PAK_ENABLED = TRUE in an appropriate
.Renviron file to enable pak integration. When
enabled, calls to renv::install() will use pak
to download and install packages.
renv::init() gains the bioconductor
argument, to be used to initialize a project with a particular
Bioconductor release. You can also use
renv::init(bioconductor = TRUE) to initialize with the
latest-available release for the version of R being used.
Project settings can now be overridden by setting an R option of
the same name. For example, one could force a project to use
Bioconductor 3.14 by setting
options(renv.settings.bioconductor.version = "3.14") within
the project .Rprofile (or similar startup R
profile).
The ad-hoc package repository called “local sources” has been
renamed to the “package cellar”. In addition, the path to the cellar is
now controlled by the RENV_PATHS_CELLAR environment
variable, rather than RENV_PATHS_LOCAL. This change was
made to reduce confusion between “local sources” of packages located
somewhere on the filesystem, as opposed to packages explicitly placed in
this ad-hoc repository. RENV_PATHS_LOCAL remains supported
for backwards compatibility.
The RENV_PATHS_CELLAR environment variable can now
be set to multiple paths. Use ; as a separator between
paths; for example,
RENV_PATHS_LOCAL=/path/to/sources/v1;/path/to/sources/v2.
(#550)
Packages installed via
e.g. renv::install("./path/to/package") will now retain the
relative path to that package within the lockfile. (#873)
Fixed an issue where invalid config option values
were not properly reported. (#773)
renv now supports restoration of packages installed via one of the r-universe repositories.
renv gains the bioconductor.version project setting,
used to freeze the version of Bioconductor used in a particular project.
When set, this will override any version that might be selected via the
BiocManager package. (#864)
renv now infers that parameterized R Markdown documents have a
dependency on the shiny package. In addition, R code
included within the params: list will be parsed for
dependencies. (#859)
renv now ignores hidden directories during dependency discovery
by default. If you want to force a particular hidden directory to be
included for discovery, you can use a .renvignore file with
an explicit inclusion criteria; e.g. !.hidden/.
renv now supports the *release remotes specifier for
GitHub repositories, for requesting installation of the latest declared
release of a package from GitHub. (#792)
renv now handles packages stored within the sub-directory of a Git repository better. (#793)
Fixed an issue where renv::history() would fail to
resolve the correct lockfile path if the working directory was changed.
(#834)
Refined dependency discovery within glue::glue()
expressions.
renv now parses packages referenced via the
base_format field within an R Markdown document’s YAML
header. (#854)
Fixed an issue where renv would fail to produce the appropriate binary repository URL for RSPM repositories built using Red Hat Enterprise Linux.
Fixed an issue where renv::snapshot() could cause
the environment name and / or path associated with a Python environment
to be omitted from the lockfile. (#843)
Fixed an issue where renv::restore() could fail to
restore packages which referred to their source via an explicit path in
the Source field. (#849)
renv no longer requires explicit user consent when used within Singularity containers. (#824, @kiwiroy)
renv now respects the R_PROFILE_USER environment
variable, in addition to the user.profile configuration
option, when considering whether the user .Rprofile should
be examined for package dependencies. (#821)
The renv auto-loader can now be disabled by setting the
environment variable RENV_AUTOLOADER_ENABLED = FALSE. This
can be useful if you’d like to explicitly control how a project is
loaded, e.g. by calling renv::load() explicitly.
renv::snapshot() gains the repos
argument, to be used to force the lockfile to be generated with the
requested set of R repositories encoded within.
renv now validates that the repos option, as used by
renv::snapshot(), is a named vector. (#811)
Fixed an issue where renv’s shims, e.g. for
install.packages(), failed to pass along other optional
arguments to the shimmed function correctly. (#808)
renv now uses tools::R_user_dir() to resolve the
default path to the global renv cache, for R installations 4.0.0 or
greater. If the renv cache still exists at the old location, that
location will be used instead. This change should only affect brand new
installations of renv on newer versions of R.
Fixed an issue with renv tests failing with R (>= 4.2.0).
renv will no longer auto-activate itself within R processes
launched via R CMD INSTALL. This behavior can be controlled
if necessary via the RENV_ACTIVATE_PROJECT environment
variable – set this to TRUE to force the project in the
current working directory to be activated, and FALSE to
suppress the renv auto-loader altogether. (#804)
Added dependency discovery support for R utility scripts identified by a shebang line instead of a file extension. (#801; @klmr)
Fixed an issue where
renv::install("<package>", type = "both") would
attempt to install the package from sources, even if the current system
did not have the requisite build tools available. (#800)
renv::scaffold() gains the settings
argument, used to create a project scaffolding with some default project
options set. (#791)
renv now determines the default branch name for packages
installed from GitLab without an explicit reference supplied; for
example, as in
renv::install("gitlab::<user>/<repo>").
(#795)
renv now infers a dependency on the bslib package
for R Markdown documents using custom themes. (#790)
renv will now prompt users to activate the current project when
calling renv::snapshot() or renv::restore()
from within a project that has not yet been activated. (#777)
renv now has improved handling for git remotes.
(#776; @matthewstrasiotto)
renv::restore() gains the exclude
argument, used to exclude a subset of packages during restore.
(#746)
Fixed an issue where renv::dependencies() could fail
to parse dependencies in calls to glue::glue() that used
custom open and close delimiters. (#772)
Fixed an issue where renv::init(bare = TRUE) would
unnecessarily scour the project for R package dependencies.
(#771)
Fixed an issue where renv could fail to install packages located on GitHub within sub-subdirectories. (#759)
renv gains the function embed(), used to embed a
lockfile with an R document (via a call to
renv::use()).
renv::use() gains the lockfile argument. This can be
useful for R Markdown documents and scripts that you’d like to run with
the context for a particular lockfile applied.
renv::rebuild() gains the type
parameter, for parity with renv::install().
Fixed an issue where renv could incorrectly copy an incompatible version of an R package from a site library into the project library during install. (#750)
renv::dependencies() can now parse (some) usages of
parsnip::set_engine().
renv::dependencies() now has improved handling for
piped expressions.
Fixed crash during dependency discovery when encountering
box::use() declarations that use a trailing comma, and no
longer treat . and .. as package names. (@klmr)
renv::clean() no longer attempts to clean the system
library by default. (#737)
Fixed an issue where install.packages() could fail
when used within an renv project to install a package from local
sources. (#724)
The chunk renv.ignore parameter can now be set to
FALSE. When set, renv will explicitly parse dependencies
from chunks even if other chunk metadata would have told renv to ignore
it (e.g. because it was marked with eval=F).
(#722)
Fixed an issue where chunks with the chunk option
eval=F would still be scanned for dependencies.
(#421)
In interactive sessions, renv::use_python() will now
prompt for the version of Python to be used. Python installations in a
set of common locations will be searched. See
?renv::use_python() for more details.
Fixed an issue where renv would fail to retrieve packages from
the archives if the lockfile entry was tagged with a
RemoteSha field.
renv::restore() will now prefer restoring packages
from the repository named in the Repository field if
available. The name is matched against the repository names set in the R
repos option, or as encoded in the renv lockfile.
(#701)
renv now supports the discovery of dependencies within
interpolated strings as used by the glue package.
RENV_CONFIG_EXTERNAL_LIBRARIES can now be configured
to use multiple library paths, delimited by either :,
;, or ,. (#700)
renv gains the configuration option,
exported.functions, controlling which functions and objects
are placed on the R search path when renv is attached (e.g. via
library(renv)). Set this to NULL to instruct
renv not to place any functions on the search path. This helps avoid
issues with, for example, renv::load() masking
base::load(). When set, all usages of renv APIs must be
explicitly qualified with the renv:: prefix.
renv::install("user/repo/subdir with spaces") now
works as expected. (#694)
renv can now parse package dependencies declared by
targets::tar_option_set(packages = <...>).
(#698)
renv no longer performs an automatic snapshot following a
user-canceled renv action – for example, if renv::restore()
is canceled, the next automatic snapshot will be suppressed.
(#697)
Added the vcs.ignore.local project setting, to
control whether the project’s renv/local folder is added to
renv’s VCS ignore file (e.g. renv/.gitignore).
(#696)
Fixed an issue where renv’s bootstrapping code could inadvertently bootstrap with the wrong version of renv, if the source and binary versions of renv on CRAN were not in sync. (#695)
Fixed an issue where renv::status() could provide a
misleading message for packages which are recorded in the lockfile, but
not explicitly required by the project. (#684)
renv::clean() gains the actions
argument, allowing the caller to control which specific actions are
taken during a clean() operation.
renv no longer performs an automatic snapshot after a call to
renv::status(). (#651)
Fixed an issue where attempts to transform RSPM repository URLs
could fail if the copy of R was installed without a local
CRAN_mirrors.csv file.
Fixed an issue where renv::init() could fail when
passed a relative path to a directory. (#673)
Fixed an issue where renv::dependencies() would miss
dependencies in R Markdown YAML headers containing multiple output
formats. (#674)
renv::install() now better respects the
Remotes field in a project DESCRIPTION file,
if available. (#670)
RENV_DOWNLOAD_METHOD is now treated as an alias for
RENV_DOWNLOAD_FILE_METHOD.
Fixed an issue where renv would fail to load if the
~/.Rprofile existed but was an empty file.
renv::snapshot() no longer creates an
renv/activate.R file in the project folder if one does not
already exist. (#655)
The renv::hydrate() function gains the
update argument, used to control whether
renv::hydrate() chooses to update packages when invoked.
When set to TRUE, if the version of a package installed in
the source library is newer than that of the project library, then renv
will copy that version of the package into the project library.
(#647)
The RENV_PATHS_PREFIX_AUTO environment variable can
now be set to instruct renv to include an OS-specific component as part
of the library and cache paths. This is primarily useful for Linux
systems, where one might want to share a global cache with multiple
different operating systems. The path component is constructed from the
ID and VERSION_CODENAME /
VERSION_ID components of the system’s
/etc/os-release file.
renv’s dependency discovery machinery now has preliminary support
for packages imported via the box package;
e.g. box::use(dplyr[...]).
Multiple cache paths can now be specified, with each cache path
separated by either a ; or :. This can be
useful when you’d like to use multiple package caches within the same
project; for example, because you’d like to share a read-only cache with
a set of projects. (#653, @vandenman)
Fixed an issue where renv could fail to discover dependencies in
directories with very large .gitignore or
.renvignore files. (#652)
renv gains a new configuration option,
install.shortcuts. When enabled, if renv discovers that a
package to be installed is already available in the user or site
libraries, renv will instead install a copy of that package into the
project library. (#636)
renv gains a new function, renv::use(), used to
download, install, and load a set of packages directly within an R
script. renv::use() can make it easier to share a
standalone R script, with the packages required to install that script
embedded directly in the script. It is inspired in part by the groundhog package.
renv::install(".") can now be used to install a
package from sources within the current working directory.
(#634)
Fixed an issue where renv::update() could fail if a
package installed from GitHub was missing the RemoteHost
field in its DESCRIPTION file. (#632)
renv now has support for custom project profiles. Profiles can be
used to activate different sets of project libraries + lockfiles for
different workflows in a given project. See
vignette("profiles", package = "renv") for more
details.
Fixed an issue where attempts to initialize an renv project in a path containing non-ASCII characters could fail on Windows. (#629)
Fixed an issue where
renv::install("<package>") could fail if renv chose
to install the package from MRAN rather than from one of the active
package repositories. (#627)
renv again defaults to using the project’s
renv/staging folder for staged / transactional installs.
Use the RENV_PATHS_LIBRARY_STAGING environment variable if
more granular control over the staging library path is required. This
fixes issues on Windows with creating junction points to the global
package cache on Windows. (#584)
renv no longer skips downloading a requested source package if an existing cached download exists and appears to be valid. This should help avoid issues when attempting to install a package whose associated tarball has changed remotely. (#504)
During bootstrap, renv will now attempt to download and unpack a binary copy of renv if available from the specified package repositories.
renv now always attempts to bootstrap itself from the R Project’s Cloud package repository, as a fallback in case no other repository is available. (#613)
renv::rebuild(<package>) now uses the
latest-available version of the requested package(s) if those packages
are not currently installed.
Fixed an issue where
renv::restore(library = "/path/to/lib") would fail to
restore packages, if those packages were already installed on the active
library paths (as reported by .libPaths()). (#612)
renv::snapshot() gains the reprex
argument. Set this to TRUE if you’d like to embed an renv
lockfile as part of a reproducible example, as generated by the reprex
package.
renv::status() now reports packages that are
referenced in a project’s scripts, but are neither installed in the
project library nor recorded in the lockfile. (#588)
Fixed an issue where package installation could fail if the
configure.vars option was set to be a named character,
rather than a named list. (#609)
renv now invalidates the available packages cache if the
https_proxy environment variable changes. (#579)
renv::install(<pkg>) will now install the
latest-available version of that package from local sources, if that
package is available and newer than any package available on the active
package repositories. (#591)
The configuration option startup.quiet has been
added, allowing one to control whether renv will display the typical
startup banner when a project is loaded.
renv now better handles being unloaded and reloaded within the same R session. In particular, warnings related to a corrupted lazy-load database should no longer occur. (#600)
renv no longer reinstalls packages that are already installed and
up-to-date in bare calls to renv::install().
renv now uses the R temporary directory for staging, when
performing transactional restores / installs. If you need to control the
path used for staged installs, please set the
RENV_PATHS_LIBRARY_STAGING environment variable.
The install.verbose configuration option has been
added. When set to TRUE, renv will stream the output
generated by R when performing a package installation. This can be
helpful in some cases when diagnosing a failed restore / install.
(#330)
Fixed an issue where renv could fail to parse R Markdown chunk headers with an empty label. (#598)
The environment variable
RENV_PATHS_LIBRARY_ROOT_ASIS can now be used to control
whether the project name should be used as-is when forming the library
path within the RENV_PATHS_LIBRARY_ROOT folder. Set this to
"TRUE" if you would prefer renv did not append a unique
identifier to your project’s library path. (#593)
Fixed an issue where GitLab references were not URL encoded. (#590)
renv no longer emits warnings when parsing multi-mode R files
that make use of re-used knitr chunks (those specified as
<<label>>). (#586)
The library used for staged installs can now be configured via
the RENV_PATHS_LIBRARY_STAGING environment variable.
(#584)
Fixed an issue where bootstrapping an older version of renv could fail if the R repositories had not been appropriately set.
Fixed an issue where renv::dependencies() could give
an error if called with a path argument of length >
1.
renv::restore() gains the rebuild
argument, allowing users to control whether packages should be rebuilt
on restore() rather than installed via links or copies from
the cache, or other sources providing already-installed
packages.
renv will now attempt to bootstrap itself from CRAN, in addition
to any repositories declared via getOption("repos"). If
you’d prefer to disable this behavior, you can set
options(renv.bootstrap.repos = character()).
The renv setting r.version has been added. This can
be set if you’d like to associate a particular project with a specific
version of R, independent of the version of R actually used when
subsequent lockfiles are created via renv::snapshot(). For
example, setting renv::settings$r.version("4.0") will
ensure that R version "4.0" is encoded in the lockfile for
future calls to renv::snapshot() in a project.
(#254)
renv::dependencies() now detects the usage of R
packages within dotfiles; e.g. the project .Rprofile.
(#569)
renv::status() gains the cache
argument, used to control whether renv::status() also
performs diagnostics on the global package cache. (#570)
Fixed an issue where renv::status() would make an
un-necessary call to renv::dependencies(). (#570)
Fixed an issue where
renv::install("bioc::<package>", rebuild = TRUE)
would fail to install the requested package. (#565)
Fixed an issue where the repository name for a package installed from an R package repository was sometimes incorrect. (#402)
When RENV_PATHS_LIBRARY_ROOT is set, renv will now
disambiguate library paths based on a hash of the project’s path.
(#564)
_R_CHECK_SUGGESTS_ONLY_=false.renv now ensures all of its dependencies are loaded eagerly when running tests, to avoid issues with missing + lazily-loaded packages.
renv::snapshot() now accepts library paths specified
with a relative path. (#562)
renv::snapshot() no longer excludes the project
itself, for R package projects that use golem.
(#538)
The renv configuration option cache.symlinks can now
be used to control whether renv used symlinks into the cache, as opposed
to full package copies. Please see ?renv::config for more
details. (#556)
renv::snapshot() gains the packages
argument, to be used when creating a lockfile that captures a specific
set of packages and their dependencies. renv will use the
currently-installed versions of those packages when determining the
package records to be written to the lockfile. (#554)
renv::dependencies() now accepts an R function as
the first argument, for finding the packages used by a particular
function. Currently, package usages must be prefixed with
:: to be detected. (#554)
renv::record(<package>) now ensures that the
latest-available version of that package is recorded in the lockfile.
Previously, a package record without any specified version was added
instead. For existing records without a recorded version, the
latest-available version on the package repositories will be used during
restore() instead. (#540)
renv now reads the default branch tagged for repositories created
on GitHub, ensuring that calls of the form
renv::install("<user>/<repo>") resolve to the
declared default branch, rather than always defaulting to
"master". (#557)
renv now only installs packages from sources if it detects that
build tools are available. This determination is done by checking
whether make is available on the PATH.
(#552)
Warnings related to unknown sources can now be suppressed by
setting options(renv.warnings.unknown_sources = FALSE).
(#546)
renv now ignores chunks with the parameter
exercise=TRUE set, under the assumption that such chunks
might contain errors and so otherwise be un-parsable.
renv now warns if sandbox generation takes a long time (> 30 seconds).
renv now provides an optional locking mechanism, to help minimize
the chance of interprocess conflicts when multiple R processes need to
use the same renv project. The option is currently disabled by default;
it can be enabled by setting
options(renv.config.locking.enabled = TRUE) in an
appropriate R startup file. (#525)
renv now uses R’s internal tar implementation by default on
Windows. This is done to avoid issues that may occur when a version of
tar.exe on the PATH exists, but does not
accept Windows-style paths. The TAR environment variable
can be set if one needs to explicitly force the use of a particular
tar.exe executable. (#521)
renv now prepends renv (<version>) to the user
agent string. This should help ensure that package binaries are located
when installing packages from RSPM outside of RStudio. (#520)
renv now uses a task callback to detect mutations to the project
library when the auto.snapshot configuration option is
enabled. This will help ensure that automatic snapshots occur when
packages are installed via a mechanism not explicitly understood by
renv. (#501)
renv now treats the user + site libraries as package sources
during a restore. If renv sees that a package already installed in one
of these libraries is compatible with the record requested via
renv::install() or renv::restore(), that copy
of the package will be copied and used. (#492)
renv now performs a lighter-weight check as to whether the
project lockfile is synchronized with the project library on load. The
default value for the synchronized.check config option has
been changed back to TRUE. (#496)
renv now handles the remotes syntax for installing
packages lying within the sub-directory of a GitHub repository; that is,
renv::install("user/repo/subdir") should work as expected.
(#497)
Fixed an issue where renv did not construct the correct URL for packages to be installed from Bitbucket remotes. (#494)
Fixed an issue where the RENV_PATHS_PREFIX
environment variable was inappropriately normalized when renv was
loaded. (#465)
Fixed an issue where
renv::install(..., type = "binary") would still attempt to
install packages from sources in some cases. (#461)
renv now always writes renv/.gitignore, to ensure
that the appropriate directories are ignored for projects which
initialize git after renv itself is initialized.
(#462)
R Markdown documents with the .Rmarkdown file
extension are now parsed for dependencies.
Fixed an issue where setting the external.libraries
configuration option would trigger a warning. (#452)
Improved handling of unicode paths on Windows. (#451)
renv::snapshot(project = <path>) now properly
respects .gitignore / .renvignore files, even
when that project has not yet been explicitly initialized yet.
(#439)
The default value of the synchronized.check option
has been changed from TRUE to FALSE.
Fixed an issue where packages downloaded from Bitbucket and GitLab did not record the associated commit hash.
Fixed an issue where attempting to install packages from GitLab could fail to install the correct version of the package. (#436)
renv::snapshot() now preserves records in a lockfile
that are only available for a different operating system. This should
make it easier to share lockfiles that make use of platform-specific
packages. (#419)
renv better handles files that are removed during an invocation
to renv::dependencies(). (#429)
The configuration option install.staged has been
renamed to install.transactional, to better reflect its
purpose. install.staged remains supported as a deprecated
alias.
Fixed an issue where renv could fail to parse non-ASCII content on Windows. (#421)
renv::update() gains the exclude
argument, useful in cases where one would like to update all packages
used in a project, except for a small subset of excluded packages.
(#425)
renv::update() now respects the project
ignored.packages setting. (#425)
Fixed an issue where RSPM binary URL transformations could fail for Ubuntu Trusty. (#423)
renv now records the OS_type reported in a package’s
DESCRIPTION file (if any), and ignores packages
incompatible with the current operating system during restore.
(#394)
renv::install() gains the type
argument, used to control whether renv should attempt to install
packages from sources ("source") or using binaries
("binary").
renv now knows how to find and activate Rtools40, for R 4.0.0 installations on Windows.
The RENV_PATHS_PREFIX environment variable can now
be used to prepend an optional path component to the project library and
global cache paths. This is primarily useful for users who want to share
the renv cache across multiple operating systems on Linux, but need to
disambigutate these paths according to the operating system in use. See
?renv::paths for more details.
Fixed an issue where renv::install() could fail for
packages from GitHub whose DESCRIPTION files contained Windows-style
line endings. (#408)
renv::update() now also checks and updates any
Bioconductor packages used within a project. (#392)
renv now properly parses negated entries within a
.gitignore; e.g. !script.R will indicate that
renv should include script.R when parsing dependencies.
(#403)
Fixed an issue where packages which had only binaries available on a package repository were not detected as being from a package repository. (#402)
Fixed an issue where calls of the form
p_load(char = <vctr>) caused a failure when
enumerating dependencies. (#401)
Fixed an issue where renv::install() could fail when
multiple versions of a package are available from a single repository,
but some versions of those packages are incompatible with the current
version of R. (#252)
Fixed an issue where downloads could fail when the associated pre-flight HEAD request failed as well. (#390)
Fixed an issue where empty records within a DESCRIPTION file
could cause renv::dependencies() to fail. (#382)
renv will now download binaries of older packages from MRAN when possible.
renv will now attempt to re-generate the system library sandbox if it is deleted while a session is active. (#361)
Fixed an issue where Python packages referenced using
reticulate::import() were incorrectly tagged as R package
dependencies. Similarly, renv now only considers calls to
modules::import() if those calls occur within a call to
modules::module(). (#359)
renv::scaffold() now also generates a lockfile when
invoked. (#351)
The argument confirm has been renamed to
prompt in all places where it is used. confirm
remains supported for backwards compatibility, but is no longer
explicitly documented. (#347)
The continuous integration renv vignette now also contains a template for using renv together with GitLab CI. (#348, @artemklevtsov)
renv now properly resets the session library paths when calling
renv::deactivate() from within RStudio. (#219)
renv::init() now restores the associated project
library when called in a project containing a lockfile but no project
library nor any pre-existing project infrastructure.
Fixed an issue on Windows where attempts to download packages
from package repositories referenced with a file:// scheme
could fail.
The configuration option dependency.errors has been
added, controlling how errors are handled during dependency enumeration.
This is used, for example, when enumerating dependencies during a call
to renv::snapshot(). By default, errors are reported, and
(for interactive sessions) the user is prompted to continue.
(#342)
renv::dependencies() gains two new arguments: the
progress argument controls whether renv reports progress
while enumerating dependencies, and errors controls how
renv handles and reports errors encountered during dependency discovery.
The quiet argument is now soft-deprecated, but continues to
be supported for backwards compatibility. Specifying
quiet = TRUE is equivalent to specifying
progress = FALSE and errors = "ignored".
Please see the documentation in ?dependencies for more
details. (#342)
The environment variable RENV_PATHS_LIBRARY_ROOT can
now be set, to instruct renv to use a particular directory as a host for
any project libraries that are used by renv. This can be useful for
certain cases where it is cumbersome to include the project library
within the project itself; for example, when developing an R package.
(#345)
The code used to bootstrap renv (that is, the code used to install renv into a project) has been overhauled. (#344)
renv no longer unsets an error handler set within the user profile when loading a project. (#343)
renv gains the “explicit” snapshot type, wherein only packages
explicitly listed as dependencies within the project
DESCRIPTION file (and those package’s transitive
dependencies) will enter the lockfile when renv::snapshot()
is called. (#338)
renv will now transform RSPM source URLs into binary URLs as
appropriate, allowing renv to use RSPM’s binary repositories during
restore. See ?config for more details. (#124)
renv will now infer a dependency on hexbin in
projects that make use of the ggplot2::geom_hex()
function.
renv now tries to place Rtools on the PATH when a package is
installed with the install.packages() hook active.
(#335)
Fixed an issue where attempts to specify
RENV_PATHS_RTOOLS would be ignored by renv. (#335)
Fixed an issue where downloads could fail when using the
wininet downloader, typically with a message of the form
“InternetOpenUrl failed: ‘The requested header was not found’”.
renv better handles projects containing special characters on Windows. (#334)
renv better handles unnamed repositories. (#333)
renv gains the config option hydrate.libpaths,
allowing one to control the library paths used by default for
renv::hydrate(). (#329)
renv::hydrate() gains the sources
argument, used to control the library paths used by renv when hydrating
a project. (#329)
renv now sandboxes the system library by default on Windows.
renv now validates that the Xcode license has been accepted before attempting to install R packages from sources. (#296)
The R option renv.download.override can now be used
to override the machinery used by renv when downloading files. For
example, setting
options(renv.download.override = utils::download.file)
would instruct renv to use R’s own downloader when downloading files
from the internet. This can be useful when configuration of
curl is challenging or intractable in your environment, or
you’ve already configured the base R downloader suitably.
renv::use_python("~/path/to/python") now works as
expected.
renv now properly expands R_LIBS_SITE and
R_LIBS_USER when set within a startup
.Renviron file. (#318)
The renv.download.headers option can now be used to
provide arbitrary HTTP headers when downloading files. See the
Authentication section in vignette("renv")
for more details. (#307)
renv gains the project setting
package.dependency.fields, for controlling which fields in
an R package’s DESCRIPTION file are examined when
discovering recursive package dependencies. This can be useful when
you’d like to instruct renv to track, for example, the
Suggests dependencies of the packages used in your project.
(#315)
renv now better handles repositories referenced using file URIs.
Packages installed from GitHub using renv::install()
will now also have Github* fields added, in addition to the
default Remote* fields. This should help fix issues when
attempting to deploy projects to RStudio Connect requiring packages
installed by renv. (#397)
renv now prefers using a RemoteType field (if any) when attempting to determine a package’s source. (#306)
renv gains a new function renv::scaffold(), for
generating renv project infrastructure without explicitly loading the
project. (#303)
renv now updates its local .gitignore file, when
part of a git repository whose git root lives in a parent directory.
(#300)
find on Solaris.cp on Solaris.renv gains a new function renv::record(), for
recording new packages within an existing lockfile. This can be useful
when one or more of the recorded packages need to be modified for some
reason.
An empty .renvignore no longer erroneously ignores
all files within a directory. (#286)
renv now warns if the version of renv loaded within a project does not match the version declared within the renv autoloader. (#285)
renv gains a new function renv::run(), for running R
scripts within a particular project’s context inside an R subprocess.
(#126)
The algorithm used by renv for hashing packages has changed.
Consider using renv::rehash() to migrate packages from the
old renv cache to the new renv cache.
renv::status() now reports packages which are
referenced in your project code, but are not currently installed.
(#271)
renv is now able to restore packages with a recorded URL remote. (#272)
renv::dependencies() can now parse R package
dependencies used as custom site generator in an Rmd yaml header. (#269,
@cderv)
renv now properly respects a downloader requested by the
environment variable RENV_DOWNLOAD_FILE_METHOD.
renv no longer sources the user profile (normally located at
~/.Rprofile) by default. If you desire this behavior, you
can opt-in by setting RENV_CONFIG_USER_PROFILE = TRUE;
e.g. within your project or user .Renviron file.
(#261)
renv::restore() gains the packages
argument, to be used to restore a subset of packages recorded within the
lockfile. (#260)
renv now tries harder to preserve the existing structure in
infrastructure files (e.g. the project .Rprofile) that it
modifies. (#259)
renv now warns if any Bioconductor packages used in the project appear to be from a different Bioconductor release than the one currently active and stored in the lockfile. (#244)
renv now normalizes any paths set in the
RENV_PATHS_* family of environment variables when renv is
loaded.
Fixed an issue where renv would not properly clean up after a
failed attempt to call Sys.junction(). (#251)
Fixed an issue where renv would, in some cases, copy rather than
link from the package cache when the library path had been customized
with the RENV_PATHS_LIBRARY environment variable.
(#245)
The method renv uses when copying directories can now be
customized. When copying directories, renv now by default uses
robocopy on Windows, and cp on Unix. This
should improve robustness when attempting to copy files in some
contexts; e.g. when copying across network shares.
renv now tracks the version of Bioconductor used within a project
(if applicable), and uses that when retrieving the set of repositories
to be used during renv::restore().
renv::dependencies() can now parse R package
dependencies declared and used by the modules package.
(#238, @labriola)
Fixed an issue where renv::restore() could fail in
Docker environments, usually with an error message like ‘Invalid
cross-device link’. (#243)
renv::install() disables staged package install when
running with the Windows Subsystem for Linux. (#239)
renv::dependencies() gains a new argument
dev, indicating whether development dependencies should
also be included in the set of discovered package dependencies. By
default, only runtime dependencies will be reported.
renv has gained the function renv::diagnostics(),
which can occasionally be useful in understanding and diagnosing renv
(mis)behaviors.
renv::equip() can now be used on macOS to install
the R LLVM toolchain normally used when compiling packages from source.
renv will also use this toolchain as appropriate when building packages
from source.
renv::install() now provides a custom Makevars when
building packages on macOS with Apple Clang, to avoid issues due to the
use of ‘-fopenmp’ during compilation.
renv::install() now respects explicit version
requests when discovered in a project’s DESCRIPTION file.
(#233)
Fixed an issue where renv:::actions() would fail to
report any actions if the project lockfile was empty. (#232)
When using renv for R package development, renv will no longer attempt to write the package being developed to the lockfile. (#231)
Fixes for checks run on CRAN.
renv will now search for Rtools in more locations. (#225)
renv::load() now ensures that the version of renv
associated with the loaded project is loaded when possible. In addition,
experimental support for switching between projects with
renv::load() has been implemented. (#229)
renv::dependencies() no longer treats folders named
with the extension .Rmd as though they were regular files.
(#228)
It is now possible to install source packages contained within
.zip archives using renv::install().
Fixed an issue where attempts to call
renv::restore() with the path to the lockfile explicitly
provided would fail. (#227)
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