transition_CrI(): computes marginal posterior beta
credible intervals for all entries of the transition matrix, returning a
tidy data frame.plot_transition_CrI(): visualises posterior mean
transition probabilities and credible intervals as a point-range plot,
with optional exclusion of the dead fate
(include_dead).plot_transition_density(): visualises the full
posterior beta density for each matrix entry, arranged as an n x n
matrix plot mirroring the structure of the population projection matrix,
with optional exclusion of the dead fate
(include_dead).fill_transitions() and
sim_transitions(): replaced missing(P) with
is.null(P) so that passing P = NULL correctly
triggers the uniform prior default.introduction vignette: a beginner-friendly
walkthrough of the full raretrans workflow using a
published Chamaedorea elegans matrix (Burns et al. 2013 /
COMPADRE). Covers entering matrices directly, uniform and informative
priors, fill_transitions(), fill_fertility(),
sim_transitions(), transition_CrI(),
plot_transition_CrI(), and
plot_transition_density().onepopperiod vignette: removed
devtools::load_all() call that would fail during CRAN’s
vignette build.L_elto dataset,
including accurate descriptions of all 13 variables, stage code
definitions, and references.@examples to all exported functions.URL and BugReports
fields.atiretoo).tidyverse in Suggests with the
specific packages used (dplyr, purrr,
tibble).ggplot2 and rlang to
Imports.NEWS.md file to track changes to the
package.
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