rCNV: Detect Copy Number Variants from SNPs Data
Functions in this package will import filtered variant call format (VCF) files of SNPs data and generate data sets to detect copy number variants, visualize them and do downstream analyses with copy number variants(e.g. Environmental association analyses).
| Version: | 1.3.0 |
| Depends: | R (≥ 3.6.0) |
| Imports: | data.table, graphics, colorspace, R.utils, qgraph, stringr |
| Suggests: | rmarkdown, knitr, testthat (≥ 3.0.0), covr |
| Published: | 2024-09-20 |
| DOI: | 10.32614/CRAN.package.rCNV |
| Author: | Piyal Karunarathne
 [aut, cre],
Qiujie Zhou [aut],
Klaus Schliep
[aut],
Pascal Milesi
[aut] |
| Maintainer: | Piyal Karunarathne <piyalkarumail at yahoo.com> |
| BugReports: | https://github.com/piyalkarum/rCNV/issues |
| License: | AGPL (≥ 3) |
| URL: | https://piyalkarum.github.io/rCNV/, https://cran.r-project.org/package=rCNV |
| NeedsCompilation: | no |
| Language: | en-US |
| Citation: | rCNV citation info |
| Materials: | README, NEWS |
| CRAN checks: | rCNV results |
Documentation:
| Reference manual: | rCNV.html , rCNV.pdf |
Downloads:
| Package source: | rCNV_1.3.0.tar.gz |
| Windows binaries: | r-devel: rCNV_1.3.0.zip, r-release: rCNV_1.3.0.zip, r-oldrel: rCNV_1.3.0.zip |
| macOS binaries: | r-release (arm64): rCNV_1.3.0.tgz, r-oldrel (arm64): rCNV_1.3.0.tgz, r-release (x86_64): rCNV_1.3.0.tgz, r-oldrel (x86_64): rCNV_1.3.0.tgz |
| Old sources: | rCNV archive |
Linking:
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