pureseqtmr: Predict Transmembrane Protein Topology
Proteins reside in either the cell plasma or in the
cell membrane. A membrane protein goes through the
membrane at least once. Given the amino acid sequence of a
membrane protein, the tool
'PureseqTM' (<https://github.com/PureseqTM/pureseqTM_package>,
as described in "Efficient And Accurate Prediction Of Transmembrane
Topology From Amino acid sequence only.", Wang, Qing, et al (2019),
<doi:10.1101/627307>),
can predict the topology of a membrane protein. This package
allows one to use 'PureseqTM' from R.
| Version: |
1.4 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
data.table, devtools, dplyr, ggplot2, Peptides, plyr, rappdirs, readr, stringr, tibble, Rcpp |
| LinkingTo: |
Rcpp |
| Suggests: |
testthat, knitr, markdown, rmarkdown, profvis |
| Published: |
2023-04-06 |
| DOI: |
10.32614/CRAN.package.pureseqtmr |
| Author: |
Richèl J.C. Bilderbeek
 [aut, cre] |
| Maintainer: |
Richèl J.C. Bilderbeek <richel at richelbilderbeek.nl> |
| BugReports: |
https://github.com/richelbilderbeek/pureseqtmr/ |
| License: |
GPL-3 |
| URL: |
https://github.com/richelbilderbeek/pureseqtmr/ |
| NeedsCompilation: |
yes |
| SystemRequirements: |
PureseqTM
(https://github.com/PureseqTM/pureseqTM_package) |
| CRAN checks: |
pureseqtmr results |
Documentation:
Downloads:
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