Retrieve and analyze biomedical literature from 'PubMed' and the wider 'NIH'/'NLM' data stack through a single, PMID-centered interface. A PubMed search resolves to a set of PMIDs, which can be used to retrieve article metadata and abstracts, author affiliations, 'iCite' citation data and links, 'PubTator3' entity and relation annotations, and open-access full text from 'PMC'. A local analysis layer operates on the retrieved tables, supporting corpus expansion through citation links, citation network construction, sentence-level entity co-occurrence, inspection of relation evidence, and 'MeSH' descriptor keyness.
| Version: | 1.1.0 |
| Depends: | R (≥ 3.5) |
| Imports: | rentrez, textshape, xml2, data.table, httr, pbapply, jsonlite, rappdirs, textpress, parallel, tools, utils |
| Suggests: | knitr, rmarkdown, DT, dplyr, testthat (≥ 3.0.0) |
| Published: | 2026-06-24 |
| DOI: | 10.32614/CRAN.package.puremoe |
| Author: | Jason Timm [aut, cre] |
| Maintainer: | Jason Timm <JaTimm at salud.unm.edu> |
| BugReports: | https://github.com/jaytimm/puremoe/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/jaytimm/puremoe, https://jaytimm.github.io/puremoe/ |
| NeedsCompilation: | no |
| Materials: | README, NEWS |
| CRAN checks: | puremoe results |
| Reference manual: | puremoe.html , puremoe.pdf |
| Package source: | puremoe_1.1.0.tar.gz |
| Windows binaries: | r-devel: puremoe_1.1.0.zip, r-release: puremoe_1.1.0.zip, r-oldrel: puremoe_1.1.0.zip |
| macOS binaries: | r-release (arm64): puremoe_1.1.0.tgz, r-oldrel (arm64): puremoe_1.1.0.tgz, r-release (x86_64): puremoe_1.1.0.tgz, r-oldrel (x86_64): puremoe_1.1.0.tgz |
| Old sources: | puremoe archive |
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