prozor: Minimal Protein Set Explaining Peptide Spectrum Matches
Determine minimal protein set explaining peptide spectrum matches. Utility functions for creating fasta amino acid databases with decoys and contaminants. Peptide false discovery rate estimation for target decoy search results on psm, precursor, peptide and protein level. Computing dynamic swath window sizes based on MS1 or MS2 signal distributions.
| Version: | 0.3.1 |
| Depends: | R (≥ 3.1.0) |
| Imports: | AhoCorasickTrie, docopt, Matrix, methods, purrr, readr, rlang, seqinr, stringr, dplyr |
| Suggests: | knitr, rmarkdown |
| Published: | 2021-12-07 |
| DOI: | 10.32614/CRAN.package.prozor |
| Author: | Witold Wolski 
[aut, cre] |
| Maintainer: | Witold Wolski <wewolski at gmail.com> |
| BugReports: | https://github.com/protviz/prozor/issues |
| License: | GPL-3 |
| URL: | https://github.com/protviz/prozor |
| NeedsCompilation: | no |
| Materials: | README, NEWS |
| In views: | Omics |
| CRAN checks: | prozor results |
Documentation:
| Reference manual: | prozor.html , prozor.pdf |
| Vignettes: |
Creating Target Decoy Databases (source, R code) Peptide Annotation and Protein Inference (source, R code) Target Decoy FDR (source, R code) Computing Dynamic SWATH Windows (source, R code) |
Downloads:
| Package source: | prozor_0.3.1.tar.gz |
| Windows binaries: | r-devel: prozor_0.3.1.zip, r-release: prozor_0.3.1.zip, r-oldrel: prozor_0.3.1.zip |
| macOS binaries: | r-release (arm64): prozor_0.3.1.tgz, r-oldrel (arm64): prozor_0.3.1.tgz, r-release (x86_64): prozor_0.3.1.tgz, r-oldrel (x86_64): prozor_0.3.1.tgz |
| Old sources: | prozor archive |
Linking:
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