phoenics: Pathways Longitudinal and Differential Analysis in Metabolomics
Perform a differential analysis at pathway level based on metabolite quantifications and information on pathway metabolite composition. The method, described in Guilmineau et al (2025) <doi:10.1186/s12859-025-06118-z> is based on a Principal Component Analysis step and on a linear mixed model. Automatic query of metabolic pathways is also implemented.
| Version: | 0.6 |
| Depends: | R (≥ 4.0.0) |
| Imports: | lme4, blme, tibble, FactoMineR, factoextra, tidyr, stats |
| Suggests: | knitr, KEGGREST |
| Published: | 2025-08-19 |
| DOI: | 10.32614/CRAN.package.phoenics |
| Author: | Camille Guilmineau [aut],
Remi Servien 
[aut, cre],
Nathalie Vialaneix
[aut] |
| Maintainer: | Remi Servien <remi.servien at inrae.fr> |
| BugReports: | https://forge.inrae.fr/panoramics/phoenics/-/issues |
| License: | GPL-3 |
| URL: | https://forge.inrae.fr/panoramics/phoenics |
| NeedsCompilation: | no |
| Language: | en-US |
| Citation: | phoenics citation info |
| Materials: | NEWS |
| CRAN checks: | phoenics results |
Documentation:
| Reference manual: | phoenics.html , phoenics.pdf |
| Vignettes: |
Introduction to phoenics (source, R code) |
Downloads:
| Package source: | phoenics_0.6.tar.gz |
| Windows binaries: | r-devel: phoenics_0.6.zip, r-release: phoenics_0.6.zip, r-oldrel: phoenics_0.6.zip |
| macOS binaries: | r-release (arm64): phoenics_0.6.tgz, r-oldrel (arm64): phoenics_0.6.tgz, r-release (x86_64): phoenics_0.6.tgz, r-oldrel (x86_64): phoenics_0.6.tgz |
| Old sources: | phoenics archive |
Linking:
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